GgaEX0001074 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9564095-9567088:+
Coord C1 exon
chr17:9564095-9564406
Coord A exon
chr17:9565166-9565256
Coord C2 exon
chr17:9567056-9567088
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGGTTGTTCTTCTGTCAAGGCT
3' ss Score
4.23
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GTATTGTTAGGCCATGGAGGCTTTAATGGAACGAGAAATGCAATAAAGCTGAGTGGATGAGGCACGAAATTAAATCTCAGCATCTGGAAGCTGTAAGCAGAGCATCGATGTATTAGCTGTATCACAGACAGTGGCTTTTTGAAGCGCCTGGCTCTGCCAGTGCTACAGAGTAGTAAAATGTTTGCAAAACTGAAGAAGAAGATCGCAGAAGAGGCAGCTATTGCTCCCAGGCCCGGGGGGGCGGCCAGGATACCGCGCTCCATCAGCAAAGAGTCCATCACGTCCGTGGGAGCGGACTCGGGAGACGACTTT
Seq A exon
GCTTCTGATGGAAGCAGCTCTAGAGAGGATCTTTCATCCCAGTTGTTCAGAAGAAATGAACAAATAAGAAAACTGGAGGTGAAGCTGTCTG
Seq C2 exon
GAGTGGATGGAAAAATTGAGTCACATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.711 A=0.516 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAGTGCTACAGAGTAGT
R:
TGACTCAATTTTTCCATCCACTC
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]