DreEX6051152 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41498073-41507151:-
Coord C1 exon
chr8:41506870-41507151
Coord A exon
chr8:41501801-41501891
Coord C2 exon
chr8:41498073-41498147
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCTATATAATTGACTCTCAGGCA
3' ss Score
4.85
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGTGAAGGCAGCAGAGAGTAACACCAGGATGAAAACTGCATGTGCCGGGGTGGATATAACAAGTTCTGCATTACGAGGACCCTAAAAAGTGTCTCTGACATTCGGAAAGGCATCTAAAACAGTGCTTAGACTTGGACTACATCTACACCTACAGAGATGTTTGCAAAGTTGAAGAAGAAGCTGGCAGAGGAGGCCGCCACTGCCCCTCGATCAGGACGTATCCCTCGCTCCATGAGCAAAGAGTCCATCACTTCTGTGGGCGCAGATTCTGGAGACGATTTT
Seq A exon
GCATCTGATGGCAGCAGCTCCAGAGATGACTTTTCTTCTCAGATCCAGCGCAGAAATGACCAGATACGAAAGCTGGAGGCCAAGCTCTCAG
Seq C2 exon
ACTACGCTGAGCAGCTTCGGCTAATGCAGAAGACCAAGGAGAAGCTTGAGATTGCATTAGAGAAGTATCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'1-4,'1-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.581 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGAAGCTGGCAGAGG
R:
TGCAATCTCAAGCTTCTCCTTGG
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]