RnoEX0039166 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23339604-23351720:-
Coord C1 exon
chr3:23351438-23351720
Coord A exon
chr3:23345378-23345468
Coord C2 exon
chr3:23339604-23339636
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCATCGTCCCAACAGGCT
3' ss Score
10.34
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCCTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGGAACCTTTTAGGTACCTGTGTATGAATTCCATTCACTGAGAAGTCCAGGGGTTAGTTTCCCCTGAAAGATATCCACACAGCAAACATGTTTGCAAAACTAAAGAAGAAAATTGCAGAGGAGACTGCTGTTGCTCAGAGGCCAGGCTGCACTCCTAGGATCCCTCGGTCTGTGAGCAAGGAGTCTGTGGCTTCCATGGGGGCTGACTCAGGAGATGATTTT
Seq A exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTGTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTCTCTG
Seq C2 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.484 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATCCACACAGCAAACATGT
R:
AGCTGTTCCATCTTTTCTGACCA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]