BtaEX6046120 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95902478-95910119:-
Coord C1 exon
chr11:95909821-95910119
Coord A exon
chr11:95904566-95904656
Coord C2 exon
chr11:95902478-95902552
Length
91 bp
Sequences
Splice sites
3' ss Seq
CAGCGTCTCTGTCTCAACAGGCT
3' ss Score
9.43
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATACTCCTGTGCCACAGACCTTTGGCCTTCATTTCAGTGGGAATGCAGCTAGTTTGGATAACTGGGCCTTTTTAGGCACCTGTCTCGGAATTCCTGGTTGCTGGCCTAACAATTGTTGTAGCGGTCAAGCACTGGTCATCAGTGTAGGAGAGCCACACAGCAAAATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTCGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGATCAGTGAGCAAAGAGTCCGTTGCCTCCATGGGAGCTGACTCAGGAGATGACTTT
Seq A exon
GCTTCTGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTTTGAGAAGGAATGAACAGATACGGAAATTAGAGGCCAGACTTTCTG
Seq C2 exon
ACTATGCTGAACAGGTCCGCACCTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCCTTAGAAAAACACCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.484 C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGAGAGCCACACAGCAA
R:
GCGGACCTGTTCAGCATAGT
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]