MmuEX6100989 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38908476-38919024:-
Coord C1 exon
chr2:38918762-38919024
Coord A exon
chr2:38911580-38911670
Coord C2 exon
chr2:38908476-38908550
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATCTGTCTCAACAGGCT
3' ss Score
11.26
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCTTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGAATGAATTTCATTCACTGAGAAGTCTAGGGGTTAGTTAACCCTGAAAGATATCCACACAGCAAAAATGTTTGCAAAACTAAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGACCAGGCGGCACAACAAGGATCCCACGCTCTGTGAGCAAGGAGTCTGTGGCCTCCATGGGAGCTGACTCTGGAGATGATTTT
Seq A exon
GCTTCCGATGGTAGCAGCTCCAGAGAAGATCTCTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq C2 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.484 C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAAAGATATCCACACAGC
R:
TTCGGACCTGTTCAGCATAGT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: