HsaEX6063004 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127691495-127701145:-
Coord C1 exon
chr9:127700856-127701145
Coord A exon
chr9:127693595-127693685
Coord C2 exon
chr9:127691495-127691569
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTCTACCTCAACAGGCT
3' ss Score
8.87
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCCTGTGTTGCCATAAGCCCTTGGCCCACATTTAAGTGGGAATGCAGCTAGCTTGGATGTCTGAAACTTTGTAGGCGCCTCTGTCTGAATCCTGAACACAGGCACCAGGACTACTGAGAGCTCGTCATCTGTGCAGGATAGCCACACAGCAAACATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGGTCTGTGAGCAAGGAATCAGTTGCCTCAATGGGAGCTGACTCAGGAGATGACTTT
Seq A exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTCTGAGAAGGAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq C2 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.589 C2=0.279
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=PU(21.2=40.0)
A:
PF068106=Phage_GP20=FE(35.3=100),PF123293=TMF_DNA_bd=PU(45.5=80.6)
C2:
PF068106=Phage_GP20=FE(29.4=100),PF123293=TMF_DNA_bd=FE(45.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGATAGCCACACAGCAAA
R:
AAGTTTCGGACCTGTTCAGCA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)