GgaINT0126269 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9566482-9567088:+
Coord C1 exon
chr17:9566482-9566579
Coord A exon
chr17:9566580-9567055
Coord C2 exon
chr17:9567056-9567088
Length
476 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATTCTTTCTTTCTTATTCAGGAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
CTTCCATGAGGAAGTTTCAAGAGCAGAATGAAGCCCACCAGGCCAACCGAGCCAAGATGGCTGAAGGAATGGCTTTGGCCTTAGAAAAAAAGGACCAG
Seq A exon
GTAATGGAGCTTAACAATTCAGCTTTTGTGTGGCTGTGGAGATCTGAGTACATTAATTAAAGTGGCTGTTCTGCATTGGATTGGCTTAGTGTGTCGAAGTCAAAGAAAGGAATGTTAAATCCAGGTTGCTTGTAATTGTTCTGAATCTTCGTCTTTTTAAAAAGAGCCCACAGAACTTTCTGGTATAGTCTGCACGTGTGTTTGACAAGATTCTGTTGTGGTAGACCTTGCTGTCATTTTTGTTTTGTTTTATTTTATTTGTATAATACTTACATATTCAGATAACATAAATTACTCCTTAGGTTTTATATATTAAAATAATATCTGTTATTTTTATTTTGGTAATTGCTTTTTTCATAATTTCTTCATCTGAATATTTCTGCTATCAGTATGGATTCTTTTTTTTTTTTTTCCTAATTGCTATACTCAAAAGTCTGCAGCTGGGTTGTGTTTTTAATTCTTTCTTTCTTATTCAG
Seq C2 exon
GAGTGGATGGAAAAATTGAGTCACATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]