MmuINT0072149 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39050159-39052101:-
Coord C1 exon
chr2:39052004-39052101
Coord A exon
chr2:39050192-39052003
Coord C2 exon
chr2:39050159-39050191
Length
1812 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTCCTTTTGTTTTGTTTTAGGAA
3' ss Score
12.85
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAGCAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCTTTAGCCAGGAAGGACCAG
Seq A exon
GTATTTAAATGTGGTACTGTCCAAGGCTCAGAAAAGATTTCCCTTAGGAACCCAACTTAAAAATCATGACACAGACCTGATAAAAGTCTATATTACCTAGAAGGAAAGGATTGCATATAAGTTCTTTAAGTATTCATTTGGCCTTTTCTTATGAAATCAGACTTGACAGTTTAATCATGAAATGTGTCCAGAATGTGAGAGAGTTATTCTCTGTGTATCTTTGTAAAATAGAAATGGAAATTGATGTATCCATAATCGACTAGTTAGCCTACAAAGATCTTACCCTCTAAAAAGTTGTCCCCAACCCTGCACCCCCAAGCACCTGCCTCTTCCAGTATAATTACTGGACATTACTCACAGCAGTTCACAAAGCCTTTTGACCCTTTCTCCAAAGTCAAGCATAGGCAGAAGGGAACTCTTTATCCCCATAGAAACAGCTACTGCAAGGTGCTACATGAATGGCAACAACAGGAAAAATAAGCCAAGTGTGGTGCATGTTTATAATCTCAACACTTGGATTGATACAGGAGGATCAGGTCTTCAAGGCCAGCCTGGTCTATTTGAAACCCTGTCTCCAAAAAAAGGGGGTGGGGGAAATAAATTAATTAATTCAAAACAAAAAAATAATGTAAAATGGAAAATAGTATTATAGTAACTATGGGGTTTGTTATATTTGATATAGTCAGTAGTGTTTTTTTTTTTTTTTTTTTTTTTGGAGGGGGGGAGGAGGTGAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCGCCTGCCTCTGCCTCCTGACCCGAGTGCTGGGATTAAAGATGTGCACCACCATGCCCGGCTTGTCAGTAGTGTTTTGAATTAGGGTAAATATCAGTGTTCCATAGTGATAATCCTGTAGATAAGTGGTTAGCTTGTTTTAAAGTATAAATATAAAAGCATCATCTACTAGTACTCAATAGATAACTATGGTATGTGAATGTATGTAAATATGAGAAAAAACAATCATGAAGTAGTATATTGTTTTGTAGCTATCATGATGGGACCTTTTGTACCAATATTATTTTCCTTGAATTCTCTTTTGTGAATGAGGAGTCTCATATCCCTCTCCTTTGTCATACACCAGAGGGCATAACAATATTAGGAAATTAAGCACTAGGCAATGGTGGAGCACACCTTTAATCCCAGCACTCGGGTCAGGAGGCGGAGGCAGGCAGATTTCTGAGTTGGAGGCTAGCAAGTTCCAGGACAGACAGCCAGGACTATATAGAGAAACCCTGTCTTGGGGAGGGGGGGTCCTTAAAAGAAAAGAAGAGAAGAGAAGGGAAGGGAAGGAAAGGAAAGGAAAAAGGAAAAGAAAATTAAGCAAGAGAGCAGACAATTAACAAATACTCGTCTTGGTCTTGCTTCCCAAGACTTTCAATAAATTGATGTCTAAACATCAGCCACGTGACCCAACTCAGTAGATTCTAGCTGCCCACTGAAGAAGTAATAGCAATGCTCCTGGAAGACACAGAAGAATAGCAGAGCTTGAATGTCCTATGAGCAGACACCTGCAGGCTATACTGTGTTCTAGAATTTTATGGAAAAATCATTTTCCTTTTTTTTAACTTTCTTAATATTGAACCAATTCTATGGGTATTTTTTGTTTGTCTATGTAATTGTGTGTCATTCCTCTTGTTGTTGTTGATTGATGACTTTTAGGGGCAAGTTGTTTTCTGAAAGTCTTAGTATTGCAGATTCTCTCCCCTGGATAGCTTACTTCTCCTTTTGTTTTGTTTTAG
Seq C2 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(13.7=52.9)
A:
NA
C2:
PF083176=Spc7=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types