BtaINT0067842 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95899699-95901538:-
Coord C1 exon
chr11:95901441-95901538
Coord A exon
chr11:95899732-95901440
Coord C2 exon
chr11:95899699-95899731
Length
1709 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCTTTATTGTTTTGTTTTAGGAA
3' ss Score
12.5
Exon sequences
Seq C1 exon
CTTCCATGAGGAAATTCCAAGAGCAGAATGAGACGTTCCAGGCCAACAGAGCCAGGATGGCAGAAGGACTGGCTTTGGCGTTGGCCAGAAAGGACCAG
Seq A exon
GTATTTTACGCGCGGCACTGCCTGGAACTGGTGGGAAGTCTCACGTGGTGACGTGCTTTCAAAACTCATGCCATAAACTTGGTAGCAAATATTTACAATCTAGGAGAAAAGGGTTGTGCTATGTAAGTTCTTTGAGAGTTCGTTTGGCTGTAGGGTGGGAAATTATCCAGAAGCTTTATAGTTGTGATCGTGAAATGTGTCCATATGTGAGAGTATCCTTTTCCAACTGTGTAGCTGTGTAAAATAGACAAGGAAAGGAAGTAGTGTGTCCATAATCTGGTGGTGAGCCCCAAGATAAGGGGAAAAAAGTCTCTGCCCTCCAAAAACCTGTCTGAAAGCCTAGTCCCAAGCACTTACCTTGATATAGTGGAGAAGGTGCTGTTAAGCTAGCGGTCATCCATAATGTACATAGTTCTTACAACCTCTGTCCCAAGGTTCTTCATCCCCAACCAGCTAGACTGAGAGGAACTTCTGTAACCTCAATAGAACCATCCATTGAAAGATGCTGAATAAATGACAGTAGAAAAGGAAAATAATACTACTACTGGTTATTAATTATAAAGTTTATTTTGTTCAGTGGCATTTTAAATTTAAGATAAACATCAAATATTGTAATGATTGTGGAGAAGGAAATGGCAACCCACTCCTGTATTCTTGCCTGGAGAATCCCAGGGACAGGGAAGCCTGGTGGGCTGCCGTCTATGGGGTTGCACAGAGTCGGACACGACTGAAGCGACTTAGCATTCATGCATGCATTGGAAAAGGAAATAGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTGGTGGGCTGCCGTCTATGGGATTGCACAGAGTCGGACACCACTGAAGGGACTTAGCATGCTTGCATTATAATGATAATTTTGATTTATTAAGACGGGGTCAATGTATTATATTACATTGCATTGAAGAAAACACATAATTTATTTCATCTTCAGTAAGTGGGGTGGTTGGTTGGCTTGTTTTACAGTGTGTAGTAGTCATCTCAGACATTAACCAGCTAGGAGAAAACATCATTCAGCAATACTTAGTGAATAACTGTGGTGTGAATGTAAATGAAGAAATAATCTAGCATTGGTGGACTTGATTGTAGGCAGTTAGGATACAGCCTTTTGTCCCAGTGGTTATTTTTTCCCCTCTTCTGTGATTGGTGAATAAGAGGCATAATCCTTTCTTCTTTAACTTTTACCAGATGGCAAGAAGGATATTGGTAAAAATTAAAATGAGAAGGAAAATAATGATCAGGGACTCCTGAAGACCACACTGTTCACCTCTTTTTCAGTAAATTAATTTTTAAGTATCAACTGCAGAGTTACCAACTCAGCTGCTCCCTGCTACCAACTCCTAAGAAATAATAATAGTACTCAGAGACAGAGACTCAGAAAGAAGCTGAAAGCTGCATCAGAAGAGCTATATAGCTTTATGTGCTCTTGGTAGAAGTTTTCTGGCTTATATTTGTGCTCTAGAATTTTATATAAAATTCATTTTCTTCTCCTTTTAGGACTCTTGGCTTTCTTACTGTTAAGCCAACATCGTGGTTTTTTTAATGTGCTGTTTTGTTTGATTGATATGTTGCTTTGGGTGGGGTGGGAGGGTTATTTTGTTTTCTGAAAATCTTGATTTTATTGATACTCTTGCCTGGAAACTGTACTTCTTTATTGTTTTGTTTTAG
Seq C2 exon
GAATGGTCAGAAAAAGTGGATCAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development