HsaINT0070379 @ hg38
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124926709-124928285:-
Coord C1 exon
chr9:124928188-124928285
Coord A exon
chr9:124926742-124928187
Coord C2 exon
chr9:124926709-124926741
Length
1446 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTTTTATTGTTTTGTTTTAGGAA
3' ss Score
12.86
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
Seq A exon
GTATTTTATATGTGGCACTGCCCAGAACTGGTGGAAAGATTTCACTTAGTGACGTGATTTCAAAAATCATGACATAACCTATAGAAAATATTTATAGCCTAGGAGAAGAGAAATGTTAAAAGTTCGTTAAGGTTTTCTTTGGCCTTTTCTTGTAAAGTGAAGAAACTTTACAGTTCTAATCATGAAATGTGTCCAGAATGTGAGAGTATCATTCCTTGTATCTGTGTAGTTTCATAAAATTGAGAAGGGAAATAGTGTATCTGTAATCTGATGGCAGGCCCCAAAATAAGAGAAAAGGTCTCTCCCCTCTAAAAACCTCTCTGAAAGTCTAACCCCCAAACATTTGCCTTTTATCCTGGAGAAGATGTTATTAACTTAGTCATAATCCATAGTATACAGAGTTCTTCCAACCTCTGTTCCCACGTTTCTTCAATCCCAACCAGCAGGACAGAGGGGAAATCCTATAATCTCAGCAGAACCAACCACTGGAAGATGCTGAATGAATAACCACAAGGAAGGAAAATAATTCTGTTACTGGCTATTACAGTAATTATGAAGTATATTTTGTTCAAAATAATAGATGACATTTTAAATTTAAGATAAGCATCAATATATTATAATGTTAATTTTGATTTATTAAGACAGAGTTTATTATGTTTCACTTAAGAAATTGTATAATTTATTTCATCTGGAGGAGGTGGGTTGGTTGGTTGGTTTTAAAGTGTCTGTTCATCATCTAGGACATTTACTAGCCAGAAAAAATACAATTTACCAATACTTAGTGGATAACTGTGGTATGAATGTATATAAATGAAGAAATAATCTAAAATTGATGGATTCTGATTATAGGCAATCAGGATATTGCCTTTGTGCAAATGGGCTTTTTTTCCCACTATTTTATGGTTTGTGAATAAGGGGCATAATTCTTTTTCTTTTGACTTACACAGATGGCATAAAGCATGTTGGTAAAATCAAAATGAAAAGGAAAATGATTATCAGGGACTGCAAAAGATCCCCCCTACTCCCCCAGTTTCAGGAATTAATTTCTAAACATCATTTCCAGAATTACTCAACTCAGCTGGTCCCAGCTACCCACTCCCAAGAAATAACAGTACTCATGGCAAAACTCCCAGGAACAAGCCAAAAAGCTGCATCAGAACAGCAGATACAGCTTTTCTTGGGTGCCCTGCTTAGTAAAAATCTGCAGGCTTATATTCATGAATTCATTCCATTCTAGAATCTTAGATAAAGTTCATTTTCTTCTATTTTTGTGACTCTTGCCTTTCTTAATATTAAACCAAGTTTATAGATTTTTTTTTAATTGGCTTTTTTGTTTTGTTTGGTTAGTTGCTTTCTGGGAAGAGTTGGGTTGTTTTGTTTTCTGAAAATCTTGGTATTACAGATACTCTTCACTGGAAACCATACTTTTTTATTGTTTTGTTTTAG
Seq C2 exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935:ENST00000373555:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=NA C2=0.718
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(10.5=18.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development