MmuINT0072149 @ mm9
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38905679-38907621:-
Coord C1 exon
chr2:38907524-38907621
Coord A exon
chr2:38905712-38907523
Coord C2 exon
chr2:38905679-38905711
Length
1812 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTCCTTTTGTTTTGTTTTAGGAA
3' ss Score
12.85
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAGCAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCTTTAGCCAGGAAGGACCAG
Seq A exon
GTATTTAAATGTGGTACTGTCCAAGGCTCAGAAAAGATTTCCCTTAGGAACCCAACTTAAAAATCATGACACAGACCTGATAAAAGTCTATATTACCTAGAAGGAAAGGATTGCATATAAGTTCTTTAAGTATTCATTTGGCCTTTTCTTATGAAATCAGACTTGACAGTTTAATCATGAAATGTGTCCAGAATGTGAGAGAGTTATTCTCTGTGTATCTTTGTAAAATAGAAATGGAAATTGATGTATCCATAATCGACTAGTTAGCCTACAAAGATCTTACCCTCTAAAAAGTTGTCCCCAACCCTGCACCCCCAAGCACCTGCCTCTTCCAGTATAATTACTGGACATTACTCACAGCAGTTCACAAAGCCTTTTGACCCTTTCTCCAAAGTCAAGCATAGGCAGAAGGGAACTCTTTATCCCCATAGAAACAGCTACTGCAAGGTGCTACATGAATGGCAACAACAGGAAAAATAAGCCAAGTGTGGTGCATGTTTATAATCTCAACACTTGGATTGATACAGGAGGATCAGGTCTTCAAGGCCAGCCTGGTCTATTTGAAACCCTGTCTCCAAAAAAAGGGGGTGGGGGAAATAAATTAATTAATTCAAAACAAAAAAATAATGTAAAATGGAAAATAGTATTATAGTAACTATGGGGTTTGTTATATTTGATATAGTCAGTAGTGTTTTTTTTTTTTTTTTTTTTTTTGGAGGGGGGGAGGAGGTGAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCGCCTGCCTCTGCCTCCTGACCCGAGTGCTGGGATTAAAGATGTGCACCACCATGCCCGGCTTGTCAGTAGTGTTTTGAATTAGGGTAAATATCAGTGTTCCATAGTGATAATCCTGTAGATAAGTGGTTAGCTTGTTTTAAAGTATAAATATAAAAGCATCATCTACTAGTACTCAATAGATAACTATGGTATGTGAATGTATGTAAATATGAGAAAAAACAATCATGAAGTAGTATATTGTTTTGTAGCTATCATGATGGGACCTTTTGTACCAATATTATTTTCCTTGAATTCTCTTTTGTGAATGAGGAGTCTCATATCCCTCTCCTTTGTCATACACCAGAGGGCATAACAATATTAGGAAATTAAGCACTAGGCAATGGTGGAGCACACCTTTAATCCCAGCACTCGGGTCAGGAGGCGGAGGCAGGCAGATTTCTGAGTTGGAGGCTAGCAAGTTCCAGGACAGACAGCCAGGACTATATAGAGAAACCCTGTCTTGGGGAGGGGGGGTCCTTAAAAGAAAAGAAGAGAAGAGAAGGGAAGGGAAGGAAAGGAAAGGAAAAAGGAAAAGAAAATTAAGCAAGAGAGCAGACAATTAACAAATACTCGTCTTGGTCTTGCTTCCCAAGACTTTCAATAAATTGATGTCTAAACATCAGCCACGTGACCCAACTCAGTAGATTCTAGCTGCCCACTGAAGAAGTAATAGCAATGCTCCTGGAAGACACAGAAGAATAGCAGAGCTTGAATGTCCTATGAGCAGACACCTGCAGGCTATACTGTGTTCTAGAATTTTATGGAAAAATCATTTTCCTTTTTTTTAACTTTCTTAATATTGAACCAATTCTATGGGTATTTTTTGTTTGTCTATGTAATTGTGTGTCATTCCTCTTGTTGTTGTTGATTGATGACTTTTAGGGGCAAGTTGTTTTCTGAAAGTCTTAGTATTGCAGATTCTCTCCCCTGGATAGCTTACTTCTCCTTTTGTTTTGTTTTAG
Seq C2 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-Golga1:NM_029793:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: