GgaINT0126266 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9564095-9565256:+
Coord C1 exon
chr17:9564095-9564406
Coord A exon
chr17:9564407-9565165
Coord C2 exon
chr17:9565166-9565256
Length
759 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
ATGGTTGTTCTTCTGTCAAGGCT
3' ss Score
4.23
Exon sequences
Seq C1 exon
GTATTGTTAGGCCATGGAGGCTTTAATGGAACGAGAAATGCAATAAAGCTGAGTGGATGAGGCACGAAATTAAATCTCAGCATCTGGAAGCTGTAAGCAGAGCATCGATGTATTAGCTGTATCACAGACAGTGGCTTTTTGAAGCGCCTGGCTCTGCCAGTGCTACAGAGTAGTAAAATGTTTGCAAAACTGAAGAAGAAGATCGCAGAAGAGGCAGCTATTGCTCCCAGGCCCGGGGGGGCGGCCAGGATACCGCGCTCCATCAGCAAAGAGTCCATCACGTCCGTGGGAGCGGACTCGGGAGACGACTTT
Seq A exon
GTGAGTTCTGCCTTACTCAGTGTCTGTCACTGCTTTACAGGAACCATTTTAAGTGCACTGTGTGAACTGAGAATGCTGTGTGGTGCCTCTGGAGGTGTATGTCTTAATATGCCGATGATTCAGTAGCTTAAGTCAGCTTAAATACCGAAGGGAAAATATTTGTCTATTTACTATGAGAGTTACTTGTTTACTCGTGTAAACATGAGTTACAAGGTTATCTCAACGCAAAACATCGTTAAACAGATGTAGGACGTTGAATAAATGTTAACTGAAGAAATATGTAAGATGCCTAGTTGTGAAATAAATTTCTGAAGCAGTAGGAAAGCAAGAATTCTAAACTCTAAAACTTAGTACTCATTTAACTGCTCTTAATGCAGATTTTATACAGCTAGAAAGCCACAGAGAATCGTGTGTCATTTATGCTTTGGATTTTGCGTGGAAAGACTGTTAAGTTCATTCCACATAAGGATTGTTGCTCTAGTTTTCTAGTTTCTAATTCTTCCAAAAGCCTTTTTCCCTGACCCAGCCCTTCTGAGCCCTGCACTATTAGAGCTTGATTTCTTTTCTTTTTTTTTTCTCAGCCATTCTGTTGTGCCATCTTAGTGATGGGTTACAACAAACTGCTTTCTGCTTTAGGCTATTTTAGAAGAATCCCTTGCATCATTCCTAGGCTGGGCAGTGTTTACCCTCATAGAGTTAGTATGTAACAGGATTATTTTGACTACGTTTTGTAAGTTACATGGTTGTTCTTCTGTCAAG
Seq C2 exon
GCTTCTGATGGAAGCAGCTCTAGAGAGGATCTTTCATCCCAGTTGTTCAGAAGAAATGAACAAATAAGAAAACTGGAGGTGAAGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGGATGAGGCACGAAA
R:
CAGACAGCTTCACCTCCAGTT
Band lengths:
355-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]