RnoINT0066245 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23345378-23351720:-
Coord C1 exon
chr3:23351438-23351720
Coord A exon
chr3:23345469-23351437
Coord C2 exon
chr3:23345378-23345468
Length
5969 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GTCCTTCATCGTCCCAACAGGCT
3' ss Score
10.34
Exon sequences
Seq C1 exon
ATCCTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGGAACCTTTTAGGTACCTGTGTATGAATTCCATTCACTGAGAAGTCCAGGGGTTAGTTTCCCCTGAAAGATATCCACACAGCAAACATGTTTGCAAAACTAAAGAAGAAAATTGCAGAGGAGACTGCTGTTGCTCAGAGGCCAGGCTGCACTCCTAGGATCCCTCGGTCTGTGAGCAAGGAGTCTGTGGCTTCCATGGGGGCTGACTCAGGAGATGATTTT
Seq A exon
GTAAGTGTCTTCTCTCTGTTTGAATGTTTGATGGAGTCAGTATGTGTTTCCTAAATACTAATGCAAGAAAACTTGCCGAGAAAAGTTTTTAGATTTTGTGCTTTTTCTAGTTTATAGATGTAGAAAACTCTGAGTTTCTCATTTTTCATTCTTACTAGCATTTGCTTTGTTATTTTTATCTATTTTCCCCTTGTGTATTCTGTGCACTACCCTCTTATTTTGTTTTTCTGTTTATATAATTTGTGCATCTTTTTTTGTGTTTTAGTCTATAAAAATGTACATCTTGCCCTGTGTGGTGGTGCACACCTTTAATCTCAGCATTTGAGAGGCAGAAGCCAAAGGATCTCTTTGAGTTTGAGGCCAGCCTCATCTACAAAGCTAGTTCCAGGGTACCCAGGACTACAAAGAAAAACCATGTCTCAAAAAAGAAACAAAAAAAATAAATAAATGAATAATAATTGGATGGATGGATGGATGAATGTACATCTTGTTTTCTCCACAGGCACATAATTTTTTTTTAAAGATTTATGCATATGAATATACTGTCCCTGTCTTCAGACACACCAGAAGAGGGCACCAGATCCCATTACAGATGGTTATGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGTCCTCTGGAAGAGCACAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCAGGCCTATAAATTTTAAGTCATTGTTATTTTATCTCTATGGATTCAGTATCCTATGTTGTTCAGTGTGTGTGTCTGTGTCTGTGTCTATGTTTGTAAGATTTCACAGTATGCTGCTTTATTAGGAAAGAGTAATGCTTGAGAATTATACTAAGTTAAATAGCTCTTTAAAGGATTTTAGTGCTTGATATATTCTTATATATGAATGCATATAACATAAAAGCAGGTTTATCCTATGGGTCTACAAGGAAAGAAAACATGTAAAGAACAATGTATATGTAAAGTATAAGTCATGAAGCAAATCTAGTTCCCATGTAAGAAATAGAACATTAAAATAGCTTACCTACCCAACTTGATCTTACTCAACTTTCTTACACCCTATGCTAGATGCATATTTAATTTATTGACCTTCTTGAAACAAGCTTTAATGCTTCCTGCCAAGAATTGTTTGATACCGTTTACTCTCTCTAGAACATGTTGCTCCCTTTTGTGCTGTGTCCTTCTGACAGATTTTTGGGCATCCTTCAGAGATTCTCCTTTCATGTTACTTCTAGAAAGCCCCTTGAACCCTTTCCTCCTGAGTTTGGTGCATATTTTCTCTTTCCTCAGTAGTAGCACCTGTTACTCTGAATTACTAGCACTGACTCACTTGATGATAATTCCAACAAAACCAGGAGTTCCATGAAAGGCAATAAAGTGAAGCACTTCACTCACACAGGTCAGTTATGAAACCAAGACTTGGGCTTTATTTTCTTTTCCTCTTGAAACACGATCTCACTTTGTATGCCTGGTTGACTTCAGTCTCAAAGAGATCTCCTTGCCTCTGCTTCCTGAGGGCTGGGATTAAAGACAGGTGACACCTCACCAAGCTCAATTTGATTTCTTTTTTTTTTTTTTTTTTTTTTTTTNNTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTTCTACGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCAATTTGATTTCTTACTTCGGGGTTGGGGACTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCAGTTCCCAGCTCCGGGGGGGGGGAAAAAAAAAGGAATTGATTTCTTACTTCATTATTACTGTGTGACAGTGGACAGCTTTCTTCACTTTTCTTTGTTTGGTTCCCATATCTGTGAAGCAGGACTATAAACTGGATCTCTTTATTAAAGTATATGTCAGGGATCTCTCAAACCATCCCCTAGGCTGGGTGATATGCTAGGAGTACTCAGTATAGACTTTCACTGACTGCCATCATCAGGGGAGAGATAGGGAAACAAGGCTTGGTGGAAAATGCAAACTCCTACAGCATTATACTCTGTTCCCCAAGTACTGAGCTGTGACTTAGAAAATGTCTGCTGAGGGATGCTATACTGTACACATCTGATGCACAGACATACATGCAGGCAAAACACCCATAATATACAGGAAATAAGCATTTCCTATAGAAATACTATAGGACCCAGTCCTTAGTAAGTATTTCATAATTAGCCTCTGTTGCTGCTACCGTTTTAGGGAAGCCTGTTTCACCACTGTTCCTAATGTTTAGCACAATGCCAGAGTCTAGGATATCTCATTCCCAGTAATAAGACAACTTGTTCTGTTTATGTCCCCCACAGTTCGCCGCTGTTGGCATTAGGAAGTAGGACCTTGGAGAGAGGATTAAGTCAGGAGCCCTGGGTATTTAGGATCAGTGCCCTTATAAATAAAGGCTCCAGACATTACCTTTTCTTTTCTACCATGCAGGTTGTAGCCAAAAGGTGCCCATCCATGAACTAAAAAGTGAGCCCTTACCAAACACTAAACTTTGACTGGGCCCTGTTCAAAGTGCAGAACTAAAGCCATTTCCCTGGGCCATTCTCAAACTGCAGAACTAAGAAGTCCATTTCTGTCATCTAAGCTACCAATGTCATCTGTTACAGATGTGTAAACAGAGAAGAGCACTAGTAGAAGGCGGTGTGTAATAGGAGTAATGTGTGGCAGCCTCTCTTCCGGAGGCTGACAAATGCTGCTTTAGGTACTCCTCATACAGCTTTGTAAGGTCAGTCACAGTCACTGTCACAGTTCGCCTTGAGGGAAACAGTGCACAGGGCAGTTGGGTAATCAGATCAGGTCCTTGCAGCTAAGAATGGTGAAACTGGGACTTGAACCCAGGTGCCGTGACTCCACACACGACTTTTAACTGCCCTTGACACTGACCCTCAAATGGTAAGGCTCACTGGATGAGCACTTTACCAACATATGTGAAGCCCTAGATTCAATCCCTAGTACAGAATCTTTTTATAAGCCCTAGGTTCCTAGGTTTACTCAGTACCAGACCAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAACTGGCTCCTGGTAAAGATTGAATGGCAAGTACCTGAACAGTTAAATAAATGTTTAAAATGGGTTGGCAATTGTTCATCCGCCTATAAAACCATCATGGAGATAAACTGAAAAACAGTATAAAAGATGAGGTATTATTAGTATTATTTTGTTTGTTGTGCTAACAGAATTCTGCCTAAGTAGAAAAATAGCATTCTTTAGAAATGTGTATTAGAGTTCAGAACGAAAGTTTCTGATGCCTGTTATTTGAACTTTATCAAAATGAGAATTGAAGAAGCAAACATTTGAGGGGCAAATGAGAAATGATTGCTAGGCCACTCTCCCTACTTTGATGGAGTTTTGAAACTTTCAGTAAAACCAAAGACTCAGGTATCATAAGGGTGCCACCTATAATCTTAGTTCTTGGGAGGCTAAGGAAGGAAGATCTTCAGCTCAAGGCCAGACTGGGCCACATAGGAAAATACTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAACAATTTTCTTCTAGTTTTTAAATTTTGTTTACCTGCCCCCACATGTGTATGTGATGTCCATTAAGTATGCACATATATGTGCAGGCATACTTACCTATGCATGCAGGCATATGTGGATGCTAGAGGTCAGCTTTGGGAATCCTCCTCTATTGATCCCTACCATTTTATTTTATTTTATTTTATTTTTTGGTCTTGTGTTTTTGCGTATGTATGTGGGTGCCTAGGTGCACACACATGCAAAGGGGAAGAGGAAATTGTGTTTCTTTCACTTGCTCTCTGACTTCTTTCAGAATGGGTCTCTCACTCAGTTAGAAATTCCTTTGAGCTGTGAAGGCTGGCTAAGGAGTTCTTATAATCCACTTGTCTCCACCCTCCTCCCCTAACATTGGGGTTCAGATATATGCAGACATGTTTGGTATTTTATCAGGTGCTTAGAAATTCAACTCAAGTTCTCATTCTTGCCCAGCAAGTGCTCTTACCCACTGAGCCTGGAGCTCACCATTTTGCTGTGGTGTCTGCCTGTCTTCTCGCCCCCCACACAATACAGGGGTCACAGGAATGCACCACCATACCTGGCAGGTCCGAACTTAAGCCTTTCTACAGCAGGTACTTTACCCACTGAACTATCTCCCCAGCCCCTATTTCAAAAAAATATTTTGTAAGTAGCTTACAAATGAGTGATTTTCCTTAAGGCATTTTGCTACATGCTTACTTTGTTTTACTCCTCCCACCCCACCCTACTTCCTTCAACTCATTGTTCTTCATCAGAAGAAGTAATAATAGTAGTGAAAAGATAAGGGGCTGGAGAGATGGCTCAGGAGTTAAAAACACTGTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATCCCCTCTTCTGGTGTATCTGAAGAGAGCTACAGTGTACTTATATATGAATAAATCTTTTTTAAAAAAGAAGAAAAGATAAGAAAAGAAAAGAGTCTGAGTATCCAAACTGCAGGGATGGCTTATTGGGTAAAAGCACTTGCTGCCAAACCTGATTACTTAACTTTGATCCCTAGGACCCATATGGTAGATAAGTACCAACTCCTGCAAATGTCCTCTGACCTCCACACAAATGTACATACATATCCTTAAATAAATAAATAAATGCAGAACAATCAAGGAACAAAGGGTTAGAATCTTAGCTGTGCATGGTGACTTATGCCTGTAATTCCAGAACTCAAGAAGCTGAGGCAATAATACAACCAAGTTCAAGGCCAGCCTGAACTACAAAATGAGACTGTGTCTCAAAACCAAAAAGAAACCTCTTCCCCAACAGTAAACTATGTCTTAGCATAAACAGATGTTATCCAAAGTAATAGTAATATGCATAGACTTTTAAGTTTTGAGGGTTTTGTTGTTGTTGTTACTGTTTTAAGGACAGGATCTCACCATATAACCCAGGCTATCCTCTGACTCAGAGATATGTCATCTCTGCTTCCTGAGCTGGGTGTTAAGGCCTGGTTTGATAAGTTGTTTGTTTTTGAGACAGAGTCTGACTGTCTTGTCCTAGAACAGCCTATGTAGATCAGGCTAGCCTTAAACTCCAAGAGTCACCTGCCTCTGCCTCCCAATTCTGGAATTAAAAGTATACAGTACCACACACAACTTTCTACAAGTTTTAAAATAACTGACTGTTGAGGCGGAAAGTAGATGCCTATTCATATATTGAATTATTGAATGCATGTTCTCTGTGAACGTCTGATGCATTTTAATAACCTTTTGTTTTGTAAATGGAGATACTGAAGCTTTATCAATACAGGATAAAGTCTTAGCCATACACAAGACTATGGTTCTTTGTTAAAGGCCCTACCCCCTTTATTCCAGGAACTCAAGTCTTTAGAAGACAAAGTGATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGTATTATATCCTCCCCCCACCCCACCCCCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCCCTGCTAAATCCCCAACCCTTGTATTATATTTTTGATGTAATATGATCATAATGAAATTATGTATTCTATACTGTTACACAAAGGGCAGTATTTATTGCTGTAGCTTACACCAGCATAGACTTATGTGACATATGCTTGTGTAACAGCACCTATGGTCTTCATGTCACTCAGGAAGGTAGTGTCACTTTCACTTTACAGATGAAGGAGTAAGGCCTCATTAGGAAGGCTTTAGTGATTACAGTCAACTAAAATGGAATAAACATTAAAGAAGAGGTGTTGCTTTTCTAACTAGTGCTGGCTCACAGGGCTAGAACACACATGAACTGGTCTGTCCTTCATCGTCCCAACAG
Seq C2 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTGTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]