HsaINT0070376 @ hg19
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127693595-127701145:-
Coord C1 exon
chr9:127700856-127701145
Coord A exon
chr9:127693686-127700855
Coord C2 exon
chr9:127693595-127693685
Length
7170 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CCTTGTGTCTACCTCAACAGGCT
3' ss Score
8.87
Exon sequences
Seq C1 exon
ATCCTGTGTTGCCATAAGCCCTTGGCCCACATTTAAGTGGGAATGCAGCTAGCTTGGATGTCTGAAACTTTGTAGGCGCCTCTGTCTGAATCCTGAACACAGGCACCAGGACTACTGAGAGCTCGTCATCTGTGCAGGATAGCCACACAGCAAACATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTTGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGGTCTGTGAGCAAGGAATCAGTTGCCTCAATGGGAGCTGACTCAGGAGATGACTTT
Seq A exon
GTAAGTACCTTTACTTAAGAAATAAAGATACTTTTGCAGGGTATTCTTCCAATAAATATTTTAAATTGCTTGATTATTTCATACCTTTCATGGTTTATAGCTGTACAAGAGCCTGTACATCTGATTCTTCTTACTCTGAGGTACCTTTTTGTTAATGTTTGGTTTGTAAATGTTAAGGTACTCTATATTTTTTTCCTTATTTTTCTGTGAGTTCCTCTCCATATTCTCTCCAGTGTCCTCTTGTACTGTTTTTCCGTCTATATACCTTATACATCTTCTTTTGCATTTCATTTCTGAAAATGTCTGGGCCTGTTTTCATTGCAGACATATATACTTATATAACAACTAAGTCATTGCTGCTTAACAAGGTCTCTGAGTTGTGGTATGGGGTTAGCAAGAGTGCATTGTTGTATTGGGACGATTGTTGGAAAGATGGCCCCAGTGATTACAGTATGTTGCTTTTTTTCTTTTTTCTTTCTTTTTTTTTTTTTTTTGAGATGGATTCTCGCTCTGTAGCCCAAAGTGGAGTGCAGTGGCCTGATCTTGGTTCACCACAACCTCTGCCTCTGGGGCTCAAGCAATTCTCGTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGTTCCACCATGCCTGGCTAATTTTTTGTATTTTAGTAGAGACAGGTTTTTACCATGTTGCCCAGGGTGGTCTCAAACTCCTGAGCTCAGGCGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCTACAATATGTTTCTTATTAGTAAAATACATTTGTGACTATAAGATTTCAAAAAATGAAGATGTTGCTATATGAGGGAAATGTCATGCTTAAAAAATAAAGTGTGGCTTTTGCATATGACAGGATCCTCTTAAGTTAGATAAATTTCTTTTCTCTTCTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCAGCCAGGCCGGAGTGCAGTGGCATGATCTCAGCTCATTGCATCCTCCACCTCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTGCAGGTGCCCACGACCACACCCGGCTAATTTTTTTTTGTTTTTAGTTTATTGTTTTTGAGATAGGGTCTCGCTCTGTCACCTAGGGTGGAGTGCAGCAGCACAATCTCGGCTCACTGCAACCTCCATCTCCCGGGTTCAGGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTTGGGACTACAGGCACCCGCCACCACGTCCAGCTAATTTTTGTATTTTTAGTAGAGACAGAGTTTCACTGTGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCGTGATCCTCCCGCGTCGGTCTCCCAAAGTGCTAGGATTACAGGGGTGAGCCACCACACTTGGCAATAAATTTCTTTAAAACTCATTTATAATGCTGGATATATATATAAAAGAATGTATGTAATATATATGTAAAGTATAAAGCATAAAGTAAATCTATCACTCATCTGAAGAGATAGAACACTATCAATTCTGTTAAGCCACTTATATGTTTCTTCCAATTTCCTCTACCCAATTTAGGATAGCATAACCACTATTCTAAATTTTGTATTTTTCATTTACTTGCTTTTTAAAATATCTTACCAGATATGTATGTATTCATAAACAATTTATTATTTAATACTGCTTGTTTTTGAAGTTATAAAAGTTGCACACTGTAGACTTCTTGGATTTCCTTTTTTAAAATTTAATTCAACATGCTTATAAAATGCATCCATGTTACAGGAAGCTGTGGTTCATTTATTTTTACTGCTGTATAAGATTCCAGGCTGGACACAGAAGCTCACGCCTGTAATCCCAATGCTTTGGGAAGCTAAGGCGGAAGGACTGCTTGAGGCCAGAAGTTCAAGACCAGCTTGGGCAACATAGCAAGACTGCATATCTACAAAAGTTTTTTTTTTTTTTTTTAATTTGCCTGGTTGGTGGTGGTATGCCTGTAGTCCTAGCTTCTTGGGAGGCAGAGGCAAGAGGATCGCTTGAGCCCAGGAGTTTGGGATTGTAGTGAGCTATGATCGTGCCACTGTACTCCAGCTTAGGCAACAGAGCAAGACTCTGTCTCTAAAGATTTTTTTTAAAAAAAAGATCCCAGCATTTGAAAAGGCCACATTTAATGTCTGTCTTCTCCTGGCGATAGACATTTGAATTGTTTCCGTTGTCAGATGAGTCTTCCTCCTGCTTTCTTGTACTGCCTGGATCCCAGGTCAGATTACATGGCAGAAGTTATTAGGTTATCGGGATGGAGCAATAAGATTACCAGATCTACATTATCACTGGCTCCTATATTTAAGAGGAAATATAAGCACACATTTGAGCATCGGGCTGAAGGATGTAGTTTTAAGGCTGGGTTCTGTGACAGATGGACCTGTTTTGCCTTCATGCTGACACCCTAAATGAAGTCTTTTATTTAGTAATGTATTCCAAATACAGAGATTGACCCAGATTCAGGAAGTAATTTATTTTGGGGTTTCTCAAGTTTTGAACTTAATACAGCCTGATCCTCAGTTCCTATCTCCAGACCCTTATATCCAACTGCATATGTTTCTCCAAACAGATCCCTCCTCTGTGGCATCTCAAATTCTAAATGAACAAAATTGAATTCATTATTTCCATCTCCAAATGTGCACCTTCATCTTCCCAAGTCACCAGCCAGAAACCCTGGAGGTATTTTAGGCTCTTCCCTCCTTTCACTTCTTGGTGTCCAATCAGTCAACACGTATTATGGCTTCTATTTCTTTCTTTTTTTTTTTTTTTTTTGGAGACAGAGTCTTGCTGTGTCGCCCAGGCTGGACCCTGGGTTCAAGCAATTCTCCTGCCTCACTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACACCGCCACACTTGGCTAGTTTTTTGTATTTTTAGTAGAGATGAGGTTTCACCGTGTGCCCAGTCTGGTCTTGAACTCCTGAGTTCAGGCAATCCTCTTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGCAGCTTTCATTTCTTAAATGTCTCAAACTTGCCTCCCTACTCCATCTTCTAGTAGTACATTTACTAGCAGAGGTTAAGCATCCCTAATCTGAAAATTTGAAATCTGAAATACTCCAAAATCTTAAACTTTTTGAGCGCCAACATGGCCACAAGTGGAAAATTTACACATAAATACTTAACACAACTTTGTTTAATGCATATCATTTAAAATATTGTATAAAATTATGTTCAGGCTATGTGTATAAAACGTATATGGAACATAATTTCACGTTTACACTTGGGTCCCATCCCCAAAATATTATATTATGTATATGCAGACATTCCAAAATCTGAAAAAATCCAAACTCCAAAACACTTCTGATCCTAAACTGTTTGGGCAAGAGATACTCAACCTATACTATCATTTGATTTCAAGCTGCCTTTCTTTCTGGGACAAACTTGTAGTCTATCTGGGTTCCCTGTCCCCAAAGTGACCTTTTTTTTTCTTTGAGACAGGGATCTCTTTCTGGCACCCAGGCTGGAGTGCAGTGGCCCGATCACAGCCCACTGCAGCCTTAACCTCCTGGGCTCAAGCGATTCTCCCATTTCAGCCTCGTGAGTAGTTGGGACTACAGGCACGTGCCGCCACACCCAGCTAATTTTTGTATTTTTTGTAGCGACGGAGTTTTGCCATGTTGCTTAGGCTGGTCTCGAACTCCTGGGCTCAAACGATCTGCCCACCTTGGCCTCCCAAAGTACTGGGACTGCAGGTGCTAGCCACTGTGCACAGCCCAAAGTGATCTTTCTAAAAGCAGATCTGTTCATGTCTCTCCAGTACTTAAAACTCATAAAACTCAGTGGCTTCCCCATTATTTTCAGGATGAAGTACAGACTCATTATTATAGCATAATGGTAAACTGTCATGGTCTTCTCTCAGCTTATATGGCCAGCATTATCTCACTGTACTTTGCTACACCCTGTGCCACAGCCAGACTGAATTTATTGCACTTTCTAGAATGGACCACATTCTTTCATGCTTACAATTTTTGCACATGCTATTTCCTCTCTCTAGAATGTCTCATTTCCCCTTTCACTCCTGCATTCCTCTGACAGACTCTTGTGCATCTTAAGACTCAGCTCATGTGTTACTTCCAGCAAACTCCCTTGACCTGACCTTCTCCTCTGGCAGCCCCCTACCCTTTACCCCTCCTGGCTGTTTGGTGCCTTGTCTTCTGCTAACCTCTGTAATAGCACCTGCTGTACTGCATTATTATTGATGATTTGCTTGTTTGTCTCTTCCACTGAACTGGGAGTTTCATGAAAGACAATAAAGTGTAGCCCTTAGGAACTCAGGTCAGGTTATAGAGTCATATCTGCTCTATTATTATTATGTGACTTTGGGCAAATTTCTTCATTTTTCCTTGCCTTATTTTTCACATCTATAAAATGGGGATAGGAACTGTATCTACCTTTATTAAAGTATGTGTGTCAAGGATCCCCAAGATCATCCCCAGATTTAATTATTCACTAGGAGGACTCACAAGACTCACCATATAGTTTTACTCACTGCTATCATTTATTACAGTGAAAGGATCTAAAACAGACTCAGCAAAGGGAAAAGGTGCATGGGGAAAAGCTTGGAGGAAACAGGTGCAAGCTTCCAAGATTCTTCTCCCAGTGGAATTACATAGGACATGCTCCATTCTCCCAGCAATGAGTTGTGACAACACATGTAAAATGTCTACCAGGGAAGCTCATTAGAGACTCAGTGTCCAGGCTTTTTATTGGGGACTGGTCATGTGAACACCCTCTGCCTACTATGTATCAAAATTCCAGAATCCAGGCCAGGCAGGGTGGCTCACACCTGTAATCCCAGCACTTTGGGGGACCAAGGCAGATGGATCAGTTGAGGTCAGGAATTTGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATACAAATATTAGCTGAGCATGGTGACACACACCTGTAGTCCCAGCTACTCAGGAGGCAGGAGAATCTCTTGAACCCAAGAGGCAGAGGTTACAGTGAGCCAACATTGTACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTAAATAAATAAATAAATAAATAAATAATCCAGACTCCAGAAGGAAACCAGGTATTCAGCATAAACCCATATTTTTGCACAAACATTTTAGGCACAATGAGCCATTCTTAACAGAATGATGGGAACCCTCCCAAAATCTAAGTTCCCAGATGCCAGCCAAGGACCAACCTTAAAAGCAGGCCTTTCTAAGGATAACAGTCTGAGGCCTGTAATGTCAGTTCTTCTGCGTAGAATCTAAAGCACTTAGCATGGCGTCTGGCTCTAAGCATTTCATAATTAGCTTCTGTTGCTGCTGCTGCTGTTATTTTGGATAGGAGCTCTTTGTTTCACCACTATTCCTAGTGCTTAGCACAGTAGTGAGACATAGGATGTCTCCTATGTCTCACTAACAGTAATAATCATAACAGCTTCTTATACTGCTAGTGGTGTGGTCTGAATGTATGTCTCCAAAAATTGATATGTTGAAACCTAATCACTAGAGTGATGGAATGAGGAGGTGAATCGTCTCCGAGATGATTAGCTCATGAGGGAGGAACCCTCATGAATGAGATTAGTGCTCTTACAAAAGAGGCCCCAGAAAGCTGCCTTGCCCCTTCCACCATGTGAGGGCACAGCTAGAAGGTGTCATGTATGAACCAGAAAGTGGGTCTTCACTAGACACCAAATCTGCTGGCACCTTAATTTTGGACTTCCTAGGCTCCAGAACTGTGAGAAATACATTTCTGTTGTTTATAAGTCACACATTCTATGGCATTTCATTATAGCACTCAAACAGACTAAGACAACTAGTAATAGATGACACATATTAAAGCTAATATGTGCCAGGCTGTGTTTTAGGGATTTGACAAGTATTGATTTACTTAATCCTCATCACAGCTCTGTGAGGCAAATGCTGTTTGTTATCACAGATTGCAAATGAGGAAACCAGTGCACAGAGAAGTTGAGTAATGAGCCTAAGTTCTTACAGCTCGTAAGTGGTAAAGCTGCAACCTGAAGCAAGGTTTTCTGACACCAGAGACTCTCCTCTTAACTGTCCACTGTCCTGACTCTCAGTACATATTGGATGGGCAAGTGGCTGGACATGTAGATGAATATTTGAGGTGAATTATTGAATAATCTTTAAAAACATTTTGGGGATACAATGGGAAACATGATTAAGGACTGGATGTTAGTATTTTTTGTTAGGAATGATAATCATATGTTGCCTATGAAGAGAAATAGCCTTAATTTTTGGAGTATTTAGGATGAAATGCCATGATGTCTGTTATTTAAATTACTTCAGAAAAATAAAAATTGATGAAGCAAATAAGGGAAAGCATCAGCAATTGTGAAAGTAGATGGAGAGCATTATTTAGACCAATCTCTCTCCCTTTCTATATTTTGAAAAATTGTATAATGAAAAGTAAAAGAGATTTTAAAAACTGAGTTATTAGCAATTGCAAGCAGTGCCTATAGCAATAGTAGTATTCATTTATTTTAAAATAATCTGGTTTGTTGGGGAAAAATGTATGCCTCATTAATATATTGGTTTGTTGAATGCATATTATCTGCTGAAGTCTATGATGCAAGTTAGAGTTTTAGATTGATATCCGTTTGTTTCATAGATGAAGATACTGAAACTTTATCAATATCGGTGAAAGATTCGTAGTCATAGACCAGCTTTTGATCCCTAAAGAACCCCCGCCTTCTTTATCCCAGGACTTTACTTTTGGAAAGATAAAGTGATTTTTTTATCATGGCAAATATAGTTTTTGTATTATATACTTGCTGTAATAATGGATCTATTTACTATTATTTATTTCAGTAGCATGCGTACACATAAAATTGATCTGTTTAGCATCTCCTCTCTCCTTCACTTTATAAGAGGAAGAAAGCGTTGCTTCCACTTTCCAGGTAGAGAAACTAGGCCCAGCTTTTCAGTGATTACAATTAATTAAAGTGTAACCAAACCTAAAATAAGACTTGTCACTTTCTGGCTCAGTATTGTGGTCTCACACATATATGAATACGACCTTCCTTGTGTCTACCTCAACAG
Seq C2 exon
GCTTCCGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTCTGAGAAGGAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-GOLGA1:NM_002077:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=0.589
Domain overlap (PFAM):
C1:
PF068106=Phage_GP20=PU(21.2=40.0)
A:
NA
C2:
PF068106=Phage_GP20=FE(35.3=100),PF123293=TMF_DNA_bd=PU(45.5=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)