BtaINT0067839 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95904566-95910119:-
Coord C1 exon
chr11:95909821-95910119
Coord A exon
chr11:95904657-95909820
Coord C2 exon
chr11:95904566-95904656
Length
5164 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CAGCGTCTCTGTCTCAACAGGCT
3' ss Score
9.43
Exon sequences
Seq C1 exon
ATACTCCTGTGCCACAGACCTTTGGCCTTCATTTCAGTGGGAATGCAGCTAGTTTGGATAACTGGGCCTTTTTAGGCACCTGTCTCGGAATTCCTGGTTGCTGGCCTAACAATTGTTGTAGCGGTCAAGCACTGGTCATCAGTGTAGGAGAGCCACACAGCAAAATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTCGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGATCAGTGAGCAAAGAGTCCGTTGCCTCCATGGGAGCTGACTCAGGAGATGACTTT
Seq A exon
GTAAGTACCTTCTGTAGTTCTTAATATTTGGTACAGCCTCATTATATTTAAAAAATAGTATTTCACAGAATCATTCCGGTAAGTATTTTCTTTTAAAATTGCAAAGATGATTTGTAGTTTATATCTGATTCTTCTTATTCTGAGGTGCTTTTCTTTTTTTTTTCGCGGGTCTCTTTCCATATTCTCTACTTTCTCCTCTTGTACTCTTTTTTCCATCTATATAAAACCTTGTGCATCATCTTCTGTATTCTGTTTCTCAGAGTACTTTGGCCTGTTGTCTCTGCACGTATATATACTTTACGTCATTGTTACTTAGTGAAGTCTGTGCATTTGGCATGGAATTAGCCAGGGAATTACCACTGTTTTTATGGGAAAATTGATGAAAAGATGGCACTGATGGCTGCACTTTGTCCCTTATTTGTAAAGTATCTTTGTAGTTGGAAAGATTTGAGAATGCTACTGTGTTAAGTAAGTATCATGCCTTGGGATTAAAATTGTGTCTGTGGCATATGACAGGATCTTCTTAAAGTCAGATAAGTTAAAAGAAGTTATTTATAAAGCTTGATATATGTAAAAGAATGTATATAATGTAAATATATTGTATAGGGCATAAAAATAAAATGAATGCTTTTTAAGTCTGTCACTTAGGCAGAGAGCTAGATTTTTGTCAATACTGTGTGTTCCTTCCTGGTTCCCTTCCCTTTCCTCCCCTTCAGATAACCCATCCTACAGTTTGTGTATATTGTTCCTTTGCTTTTTAAAATATCCTGCCAGATACATATATATTCATAAACAACCTGTTGCTTATTTTCAGACTTTGTAAGAACAATGCACTGCGCGTGGCTCATTTATTTTTACTGCTGTGTAACACCCTGGCATTTGAAAAAGGCCACAGTGGGTCTCTGTCTTTTACTGGTGATAGATACTTGAGTTGTTTCCATGGTCAGATGAGTCGACCTCCTCTCTTATACTACCTGTTCAGGTCAGATTACATGGCAGAAGCTATTAGGTTATTGGGGTGGAATAATAGATTACCAGATCTAAATTACTGGCTCCTGTATTGAAGAGGAAATATAAATGCACATTTGAGCACCAGGCTGAAGGATGTAGTTTTAATGCTGAGTTCTCTGGCAGAGGTACTTGCCTTGGCATCATGCTGACTCGCTAAGTGAAGTCTCTCATCTCAAATGCATTCCAGATATAGAAATTGGCTTGAATCCAGGAAATACTTTGCTGTGTGACTTCTGAAGTTATCTGTTTGAATTTATTCAAATTCTGATTCTGATCCTCACTCCCTGTCTCCAGACTCTAGATTTTCATTACATATCTCTCTCCAACCAGGCACCTTTCCTCTGGTATTTCAAGTCCTGAATGTATTAACTCTATTTCCACCTTTGCACCTTTGTCCCCCAGGTCACCAGCAAGAAAGCTTGGCAACATTTTAGACTCTTCTTCACTTCTTGGTGTCTAGTCTGTCAGCAAGTATTTTGGTTTCCATCTCCTGTCTCAGACTTACCCTTTGTACTCCACTTACTAGTAGTCCATTTATTGTTGTTTAATTGCTAAGCCGTGTCTGACTCTTTGCAGTCCCATGGACTGTCGCCCACCAGGCTCCTCTGTCTGTGGGATTTCCCAGTCAAGAATACTGGAGTGGGTTGCCTCTATTAACTCCCCAAAACAGATCTGTTCATGTCTCTCCAATGCTTCAAACTTCTCTGTGGCTTCCCATCATCTTCAGGATGAAGTGCAAAGTCATTGTTATGTATAATGGTTAACCCCTGTGGTCGTGACACAGCTTACCCATCCACCTTATCTCACTCTACATTCCTACACCCTGTGCTCCCTCCATACTGAACTTACTGTACTTTATGGAACAGACAACTTTGCATCATGCCTACAAGTGTTCACATATGCTATCTCCTCTCTGGAACTTCTCCTGTTCCCCTCCTCTCACTTCTGCATTTTTCTGGCAGATTTTGTTCATCCTGCAAGACTTGGCTCACATGTTGCTTCCAGGAAGCCCTTTTGACCTGACCTGCCCCCTCACCCTCTCTAACCTTCATCCCTCCTGGCTGTATCTGTCTCTTGACCCTCTCATCCTCTGTAATAGCACCTATTACACTGCATTGTTCCTGATGATTTGCTTCTTTGTCTCTTCCACTAAACTGGGAGCTGCTTGAGAGGCAATAGAGTAGTGGTTGGGAGCCCAGGTCAGGTTAGGGAGGCAGACCTGGGTTTGATGGCTCTTCCGTTATTGTGTAACCTTGGGCGAGTCTTTTTCACTTTCCTGTGCCTTAGTTTCCTCATCTATAAAATAAGAACAATACCCATCTTTATTAAAGTCTGTGTGTTGCAGAGTCGTGGGGGGAGGGTTCTCCCCTAAGTTCAGTTATTCATTAGAAGAGTTCACAGGACTCAGCATATAGTTTTATTCACTGCTATCATTTATCACAGGGAAAACATTTATTACGAAGCATAATTAGCAAAGGGGGAATGTGCATGGGCAGAATCTGGAGGGAAGCAGGCACAGGCTTCCAGGAGTCCTTTCCAGGGGAGCTGCCTGGCGCACACTTGTTTCCCTCAGCAAGGAACTGTGACAGCACAGGAGAAGATGTTGTCTATCAGGGAAGCTCAGTAGAGACTCAGCGCTCAGGAATTTTACTGGAGGCTAGTCTTACAGGCACCTTCTGCCTAGCATTTACCACAATTCCAGACTTCTAGAAGGAAGACACGTGAAAGGGTTAATAGCCTCAGTAGGGAGGCCAGAGGTCCCCAAGTGGCAGGAGGAAATAAACTACAAGTGGTAAACATTTTTTTTTTTCCTTTTTCTTTTCTCTTCTAATCCTGTGTCATCATGGCGACAGCTGGTTCTGCCTGAACTTAACTTTATCTCAAACCTTGAGCTAACCAATGCTTTTTTTCTCATGGAAATGTCTTTCTTAAGCCATGTTAATGAATTTTGTATTTGCTTGGAAATCTGCCTGTCTTCAAGATTCATATCCATTGTTTTATTGTGGGTGGGGGGGTGACTCACCTGTGCCAGTGCTATCTCAAAATGCATGTTGGAGTGAGGGGGTGAGGGGCCTGGTGCAACTCTGCAGCTTGCTAGCAGGTATATAACTTCATGCTGAAAACTAACAAGGGGGCACTCTTTCTGTTCCCTTCTGATGTCTATGTCAGAAGCTTTCTCTGTCTCTTTTTATACTTTAATAAAACTTTGCTGCACAAAAGCTCTGAGTGATCAAGCTTCGTCTTTGGTCCCAGATCAAATTCATCTCCTCTGGAGGCCATGAATCCCAGCGTCATTCACAGCTCGTAGCAGCAACCTTTCACGTGTTAGGCATAAATCACATTTTTTGTACAATTGGTTTAGGTACCATGAGCCATTCTTACCAGGAATGGTGAGAACCCTTGTAAAATCTAAGTTCCTGTGGGCTAGCCAGGGGGTCACCTTACAAGCCGGCTTTGCCAAGGACAGCAGTCTCAGGCCTACGACATGAGCTCTTTTCTGCACAGTGTGTGAAACACTTAGTAGTGCCTGGCTCTTAAGCACTTAGTAATTGGTAGTTGCTGCAGCTGCTGCTGCTTAGACAGGGACTCCTTTTCATCACTGTTCGCAGTGCGGACAACAATACTAAGAATAGGTGTCTCAGTGCCGATAATAATCATAGTTTCTACTGCTGTGTATTAAAGCTAATTATGTGCCAGGCTCTGTTTTAGACCTGACAAGTTTTGATTTGTTTACCTCCTCGTCACAGCTCTGTGATGCTGATTATGTCTGTTAACCACATTTTACATGTGAGGAAGCCAGTGCACAGAGAAGTTGACCAACTGGTCCAAGTTCTTATAGATTATAAGTGATGATGATGTAACTTTAGCCTGGGCCTGCCACCTCCTGAAACCCCCTTTAACCATTCCTGTGACTGGGTCTCCATAAATGTTGGATGAGTAAATGGGTAGATGGATAAATAAATATTTAAAATGAATTTTTGAACCACTCATTATTTTGCCAATAAATGGGGAAGACTGAGGACTGGATATTAGATACTATTATTTTTAATTTTGTTAGGTGTAATAATGGTATTGTGGCTATAAAGGAAAATGTTTTTATGTTTTATAAGTGTTTGTCAAAAGTGATTTATAGTACTATAATAAAATTTGATAAAACAAATGTGAAAAATCAGCAGTTGTTAAAGTAAACCACTCTCCCTACTCTTCTGTATTTTTAAAATTTTATAATCAAATGTAGGAAGATAAAGTGATTTATTTATTAGCAGTAGTAAACATTGCCCAAAGTAATAATAGTGCCCATATGTTTTAATAATCTAGATTATTGGGAAAATTTGATGTCTCATTAATATAATAATTAACTGAATATATATTTTCTGCTAAAGGTTTTGACGCATTTTAGAACCATAGATTGATATCCCTTTGTTTTATAGATGAAGATACTGAAACTTTATCAATGTCAGTGATAGATTCTTTTTTAAAATATTTGTTCATTTATGGCTGCATTGGTTCTCAGTTGTGTCATGCAAGGTCTTCGTTGTGGTGTTTGGGATCCTTCACTGTGGCACACAGGCGTAGTTGCCCTGGGGCATGTGGAATCTTAGTTCCTGGACCAGGGATCAAACCCACAGCCTCTGCATTGGAAGGCAGATTCTCAACCACTGGACCACCAGTAAAGTCCCAGTGACAGACCACCCAGCCTTCAATCCCTTGCTAAAGAACCTTCCTCCCTTTACCCCAGGATTTTACCTTTGGGAAAATAAAGTGATTTACTTTTTCATCTGAAAATATATTTTTTGTGTTATGTACTTGGTACAGTATGATCATTGGTAGCTCAGCTGGTAAAGAATCTGCCCACAGTTCAGAAGACCCCAGTTCGATTCCTGGGTCGGGAAGATAATGGATTTGTTTCCCACCAGGTATTCCAATACCATGTGCACACACACACACACACACACACAATTTATCTATTTTGCATCTTATATCTCCTCACTTTATAGATGGAGAGACTGTTGCTTCTTCTTTATAGGTAGAGAAGCTTTTTAGTGATCACTTAACGGGTAACCAAACCTGAAATAAGAGTTGTCGATTTCTGGTTATGTGGTCTCACGCTGCTAAAAATCCATGTATGAATACAGCGTCTCTGTCTCAACAG
Seq C2 exon
GCTTCTGATGGAAGCAGCTCCAGAGAAGATCTTTCATCCCAGCTTTTGAGAAGGAATGAACAGATACGGAAATTAGAGGCCAGACTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development