MmuEX6100990 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39048310-39052101:-
Coord C1 exon
chr2:39052004-39052101
Coord A exon
chr2:39050159-39050191
Coord C2 exon
chr2:39048310-39048438
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTTGTTTTGTTTTAGGAA
3' ss Score
12.85
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAGCAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCTTTAGCCAGGAAGGACCAG
Seq A exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
Seq C2 exon
GATAAAAGGTTTCTAACATCTCAGCTGCAAGAAGTAAAGAACCAGAGCTTGAGCCTTTTTCAAAAAAGAGATGAAATTGATGAATTAGAGGGGTTCCAGCAGCAGGAAATCAGCAAAGTAAAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-'10-15,'10-13,11-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.196 C2=0.012
Domain overlap (PFAM):
C1:
PF083176=Spc7=PU(13.7=52.9)
A:
PF083176=Spc7=FE(8.4=100)
C2:
PF083176=Spc7=FE(32.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAGCCAGGAAGGACCAG
R:
TGCTGCTGGAACCCCTCTAAT
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types