MmuEX0021411 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39047597-39050191:-
Coord C1 exon
chr2:39050159-39050191
Coord A exon
chr2:39048310-39048438
Coord C2 exon
chr2:39047597-39047766
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAGTTGGTGTCTTCTTACAGGAT
3' ss Score
7.84
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
Seq A exon
GATAAAAGGTTTCTAACATCTCAGCTGCAAGAAGTAAAGAACCAGAGCTTGAGCCTTTTTCAAAAAAGAGATGAAATTGATGAATTAGAGGGGTTCCAGCAGCAGGAAATCAGCAAAGTAAAACACATG
Seq C2 exon
CTTTTAAAAAAAGAAGAATGCTTGGGGAAGATGGAGCAAGAATTGGATGCACGAACCAGGGAACTTAACCGTACTCAGGAGGAGTTGGTGACTTCTAATCAGTTGTCATCTGACTTAAACGAGCGGCTAGAAGAATTGCAGAGACACTGCTCAACGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.196 A=0.012 C2=0.601
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(8.4=100)
A:
PF083176=Spc7=FE(32.8=100)
C2:
PF086476=BRE1=PU(44.4=56.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types