HsaEX0027943 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124921723-124926741:-
Coord C1 exon
chr9:124926709-124926741
Coord A exon
chr9:124923095-124923223
Coord C2 exon
chr9:124921723-124921892
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTCTTTCAAATAGGAG
3' ss Score
10.02
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
Seq A exon
GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG
Seq C2 exon
CTTTTAAAAAAAGAAGAAAGTCTAGGGAAAATGGAACAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGTACCCAGGAGGAGTTGATGAACTCCAATCAGATGTCATCAGACTTAAGCCAGAAGCTAGAAGAATTGCAGAGACACTACTCAACGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=0.623 C2=0.843
Domain overlap (PFAM):
C1:
NO
A:
PF075369=HWE_HK=PU(11.4=18.2)
C2:
PF104734=CENP-F_leu_zip=PU(15.4=95.0),PF045827=Reo_sigmaC=PU(12.8=95.0),PF048597=DUF641=PU(19.6=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAGAAAAGATGGATCAGCT
R:
GCTCTTCCAGCGTTGAGTAGT
Band lengths:
196-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development