BtaEX6046123 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95896823-95899731:-
Coord C1 exon
chr11:95899699-95899731
Coord A exon
chr11:95897482-95897610
Coord C2 exon
chr11:95896823-95896992
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTCTTCTGCATAGGAT
3' ss Score
9.92
5' ss Seq
ATGGTGCGC
5' ss Score
6.85
Exon sequences
Seq C1 exon
GAATGGTCAGAAAAAGTGGATCAGCTTGAAAAG
Seq A exon
GATAAAAGGTTTCTGACAGCTCAGTTACAGGAAATGAAGAACCAGAGTTTGAATCTTTTCCAAAGAAGAGATGAAATGGATGAATTAGAGGGATTCCAGCAACAGGAACTGAGTAAAGTAAAGCACATG
Seq C2 exon
CTTTTAAAAAAAGAAGAAAGCTTGGGGAAAATGGAGCAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGCACCCAGGAGGAATTGGTGACTTCCAGTCAGATTTCGTTAGACTTAAGCCAGAAGCTGGAAGAACTGCAGAGACACTACTCAGCGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.209 C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
PF0026115=Tropomyosin=PU(21.8=55.8)
C2:
PF0026115=Tropomyosin=FE(50.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAGAAAAAGTGGATCAGCT
R:
TCTTCCAGCGCTGAGTAGTGT
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]