HsaEX0027943 @ hg19

Exon Skipping

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127684002-127689020:-

Coord C1 exon

chr9:127688988-127689020

Coord A exon

chr9:127685374-127685502

Coord C2 exon

chr9:127684002-127684171

Length

129 bp

Sequences

Splice sites

3' ss Seq

TGTCTTCTTCTTTCAAATAGGAG

3' ss Score

10.02

5' ss Seq

ATGGTATGC

5' ss Score

7.14

Exon sequences

Seq C1 exon

GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG

Seq A exon

GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG

Seq C2 exon

CTTTTAAAAAAAGAAGAAAGTCTAGGGAAAATGGAACAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGTACCCAGGAGGAGTTGATGAACTCCAATCAGATGTCATCAGACTTAAGCCAGAAGCTAGAAGAATTGCAGAGACACTACTCAACGCTGGAAGAGCAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935-'9-10,'9-8,10-10

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.727 A=0.651 C2=0.860

Domain overlap (PFAM):

C1:

PF120723=DUF3552=FE(10.6=100),PF083176=Spc7=FE(8.1=100)

A:

PF120723=DUF3552=FE(41.3=100),PF083176=Spc7=FE(31.9=100),PF075369=HWE_HK=PU(11.4=18.2)

C2:

PF104734=CENP-F_leu_zip=PU(15.4=95.0),PF078886=CALCOCO1=PU(13.0=95.0),PF0157614=Myosin_tail_1=PU(12.9=90.0),PF083176=Spc7=PU(12.7=95.0),PF048597=DUF641=PU(19.6=90.0),PF045827=Reo_sigmaC=PU(12.8=95.0)

Main Inclusion Isoform:

ENSP00000362656