GgaEX0001078 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9567056-9568365:+
Coord C1 exon
chr17:9567056-9567088
Coord A exon
chr17:9567778-9567906
Coord C2 exon
chr17:9568196-9568365
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGTTTGTTTATCAGGAA
3' ss Score
9.91
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GAGTGGATGGAAAAATTGAGTCACATTGAAAAG
Seq A exon
GAAAAAAAAATGCTCGAAACACAGTTACAAGAAATGAGGGAGCGGAGCTTGAATCTTTTTCAAAAGAGAGATGAAATTGATGAACTGGAAGGCTTTCAACAGCAGGAAATGGCCAAAGTTAAACACATG
Seq C2 exon
CTTTTGAAAAAAGAAGAATGTCTAAGCAAAGCAGAGCAGGAACTAGAGGCACGCACTCGAGAACTAATCCATGCTAAGGAGATGCTTCAGGAAGCGAGCACCGAGTCATCAGGCCTGCGGAAAGATCTTCATGAGTTGCAGGAGCAGTTCTTGGAGGTGGAGGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.256 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGGAAAAATTGAGTCACA
R:
CTCCGTGCCTCCACCTCC
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]