DreEX0035462 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41491525-41495177:-
Coord C1 exon
chr8:41495047-41495177
Coord A exon
chr8:41493732-41493860
Coord C2 exon
chr8:41491525-41491694
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTTTTTGTCAAACAGGAG
3' ss Score
9.08
5' ss Seq
ATGGTACTT
5' ss Score
5.19
Exon sequences
Seq C1 exon
CATCCATGCGCAAACTTCAAGACCAGAACGAATCTTTCCAGACAAACAGAGCCAAGATGGCAGAAGCCATGTCCTTAGCATTAGAAAAAAAAGACCAGGAGTGGATGGAAAAACTAGCTTCACTGGAGCAG
Seq A exon
GAGAAGTTGTCTTTGACTTCTCGGCTAGACGAAATGACAGAGCAGAGTTTAAGTCTGTTCCAGAAGAGAGACGACCTGGATGAGCTAGAGGGCTTTCAGCAGCAGGAACTGGCTAAAGTCAAACACATG
Seq C2 exon
CTGCTGAGGCGAGAGGAACAGCTTAATCAGCGGGAGAAAGAGCTGAAACTGAGAGGAGAAGAGCTGAACACAGCCAGACTGACCCTGGGCAAAACGCAAGACAAGCTGTATGAGCTGGGAGAAGAACACGAGGAGATATGCAGGACCAACTCACAGCTACAGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.481 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCAAACTTCAAGACCAGA
R:
TCGTGTTCTTCTCCCAGCTCA
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]