RnoEX0039162 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23337974-23341337:-
Coord C1 exon
chr3:23341240-23341337
Coord A exon
chr3:23339604-23339636
Coord C2 exon
chr3:23337974-23338102
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCATTTTGTTTTGTTTTAGGAA
3' ss Score
12.07
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAACAGAATGAAACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGGAAGGACCAG
Seq A exon
GAATGGTCAGAAAAGATGGAACAGCTTGAAAAG
Seq C2 exon
GAAAAAAGGTTTCTAACATCTCAGCTACAAGAAGTAAAGAACCAGAGCTTGAGCCTTTTTCAAAAGAGAGATGAAATTGATGAGTTAGAGGGTTTCCAGCAACAGGAAATCAGCAAAGTGAAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGCCAGGAAGGACCAG
R:
TCCTGTTGCTGGAAACCCTCT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]