HsaEX6063005 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127685374-127690564:-
Coord C1 exon
chr9:127690467-127690564
Coord A exon
chr9:127688988-127689020
Coord C2 exon
chr9:127685374-127685502
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTGTTTTGTTTTAGGAA
3' ss Score
12.86
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
Seq A exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
Seq C2 exon
GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=0.727 C2=0.651
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(10.5=18.2),PF0003816=Filament=FE(44.4=100)
A:
PF120723=DUF3552=FE(10.6=100),PF083176=Spc7=FE(8.1=100)
C2:
PF120723=DUF3552=FE(41.3=100),PF083176=Spc7=FE(31.9=100),PF075369=HWE_HK=PU(11.4=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGCCAGAAAGGACCAG
R:
TGCTGCTGGAACCCCTCTAAT
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)