BtaEX6046122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95897482-95901538:-
Coord C1 exon
chr11:95901441-95901538
Coord A exon
chr11:95899699-95899731
Coord C2 exon
chr11:95897482-95897610
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTGTTTTGTTTTAGGAA
3' ss Score
12.5
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCCATGAGGAAATTCCAAGAGCAGAATGAGACGTTCCAGGCCAACAGAGCCAGGATGGCAGAAGGACTGGCTTTGGCGTTGGCCAGAAAGGACCAG
Seq A exon
GAATGGTCAGAAAAAGTGGATCAGCTTGAAAAG
Seq C2 exon
GATAAAAGGTTTCTGACAGCTCAGTTACAGGAAATGAAGAACCAGAGTTTGAATCTTTTCCAAAGAAGAGATGAAATGGATGAATTAGAGGGATTCCAGCAACAGGAACTGAGTAAAGTAAAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.000 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0026115=Tropomyosin=PU(21.8=55.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGAGACGTTCCAGGCC
R:
TCATTTCCTGTAACTGAGCTGTCA
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]