GgaEX1026950 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9566482-9567906:+
Coord C1 exon
chr17:9566482-9566579
Coord A exon
chr17:9567056-9567088
Coord C2 exon
chr17:9567778-9567906
Length
33 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTTTCTTATTCAGGAG
3' ss Score
9.85
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTTCCATGAGGAAGTTTCAAGAGCAGAATGAAGCCCACCAGGCCAACCGAGCCAAGATGGCTGAAGGAATGGCTTTGGCCTTAGAAAAAAAGGACCAG
Seq A exon
GAGTGGATGGAAAAATTGAGTCACATTGAAAAG
Seq C2 exon
GAAAAAAAAATGCTCGAAACACAGTTACAAGAAATGAGGGAGCGGAGCTTGAATCTTTTTCAAAAGAGAGATGAAATTGATGAACTGGAAGGCTTTCAACAGCAGGAAATGGCCAAAGTTAAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.545 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAATGAAGCCCACCAG
R:
GCTCCGCTCCCTCATTTCTTG
Band lengths:
126-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]