HsaEX6063005 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124923095-124928285:-
Coord C1 exon
chr9:124928188-124928285
Coord A exon
chr9:124926709-124926741
Coord C2 exon
chr9:124923095-124923223
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTGTTTTGTTTTAGGAA
3' ss Score
12.86
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCCATGCGGAAATTTCAAGAGCAGAATGAGACATTCCAAGCCAACAGAGCCAAAATGGCAGAAGGACTGGCTTTGGCATTAGCCAGAAAGGACCAG
Seq A exon
GAATGGTCAGAAAAGATGGATCAGCTTGAAAAG
Seq C2 exon
GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'24-19,'24-18,25-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.718 C2=0.623
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(10.5=18.2)
A:
NO
C2:
PF075369=HWE_HK=PU(11.4=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGCCAGAAAGGACCAG
R:
TGCTGCTGGAACCCCTCTAAT
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains