MmuINT0072147 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39052956-39056150:-
Coord C1 exon
chr2:39056060-39056150
Coord A exon
chr2:39053031-39056059
Coord C2 exon
chr2:39052956-39053030
Length
3029 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CACCACCCTCCTCACCCAAGACT
3' ss Score
2.45
Exon sequences
Seq C1 exon
GCTTCCGATGGTAGCAGCTCCAGAGAAGATCTCTCATCCCAGCTTTTGAGAAGAAATGAACAGATACGGAAGTTAGAGGCCAGACTTTCTG
Seq A exon
GTATGTATTAAGAAACCATAAACAGCAAACATAGGCCTGCTATGAGCCTGCTTGATAGGGTATCTCTATAGTAACTTCCAGGTAACAGCTGAGCTCCTAGTCAAAAAGTTTTTTTTTAAAAGCATCTATTTTTCTGCTCCTGAAGTTTCTAGCCACAGATATAAAAAGTGTTTAAAGTTTATGTAAAGGATGGTATGGTGCTGCAGGCCTTTGATAATAGTACTTAGGGAGGCAGGAAGATTGTAAATTTAAGGCCAGCCTAGGCTACATAGCAAGTTGCTGGGGGGCGGGGTGGGGGGATTCAGAGAGATGGTTCAGAGGGTCGGTGGACCAGCTGCCAAGACTGACAACAGAGTTTGATCCCTGGGACCCAAATGGAGGAAAGAAAGGATCACCTTCTGAAAGCTTTCCTCTAATGCATGCATGTGCACAGAAAATTAAAAAAAAAACAAAAAACATGAAGTTTGAAGACTTTTACTTTTTTACAATGAGAAAAAAATGTAGAATAGATTTGGCCATGTTCCACCATTAGCATAGCTTACTTTTAGATGCAAAATTATAGGGACCACTCTCTATAGGCTAGGGAATGAGCAACAGATGTTGAATCCATGTGCTACAGATAAGTTTTGCTGCTGGGCTGCCACTTAGTGTAGCTCACATCACTCATGTGAGTCTTGCTCCAGGACTTGAGGCCATTTTTTCCTGATTTTCCTAACTTTATTATCTGCTTCTTTAGGAGGTGTAATTCTCATTACATCTCTGTCTTAGTCACTATACTACTGTTGCTGTGAAGAAACACCATGACCAAGGCAACTTTTAAAAAAGAAAGCATGTATTGGGGGCTTGCTTACAGTTTCAGAGGTTTAGTTTAGTCCATTTTTATCATGGTGGGAAGCATGATGATTGGCAACTGTGGTGCTAAAGAAGTAACAGAGACCTATATCCTGATGTGAAAGCAAAGAGACATCGGGCCTGGTGTAGGCTTCTGAACCTCAAAAGAACACACCCAGTGAGTGACACAGTCCCATCAACTAGGTCACATCTACTCCAGCAAGGCCATGCCTTCCAATCCCTCTAAAATAGGACCACTCCTTGGTGACTAAGCATTCAATTATATGAGCCCGTGGGAGCCATTCTTATTCAGTTCTTATGCTGTTCAGTTTAAATTTACATAGCTCCCATTATATCCTTTAACCAAACAAGGCATGTTCATACTAGAATTGTGAATTTTTATATATATATTTTTTGACAGTAGACATATTTTGATAGCTTCATCCTGTGAAGTGGTTCATGATTTATGTGTCTCCTTTTGTTCCTTGAATTTATGCCAATTTTTTTTTTTTGCGGGAAAACAGTAAAGTAAAATTATTTCACTGGATTGTATGTGAAATAAATTTGTATAGCTGTCAGAAGTCTATAGCATTATTCACACGATTGTTAATCATTTTTTCTTCAGGTTCAGCTTCTTGGGGTCAACAAAATAAGGCACACGGGTAGTGAATTCAAACTAAAATTCAGACCTAGCTCCAGACAGCCTGCTTAAAGTCAGCTGTTAGTATCTTGTACACCTATCCATAACATTGGTTGTTCTATCTTGATACCTGTAAAGAACACTAGTAGCAGAAGTGAAATAGCTATTCCTTAATGTTGGGAAGGCTCTTATAGTGTTAGTAAGTGCTTTTCCTGATACAGAAAGGAGAGTGAGTAGCCTTGACATTTATCAGTCCACTTAACATCTTAGGAATTGTCACTGGCCTTGTATGAGTACTCATTGCTGTGTGCCAAGCACTTAATGTATAGATTACTTTAATGTTTCCTTTGAAATATATGTAATTAGGCCCAATGTGTAATTAGGCAGTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGGATCTCTGAGCTTGAAGCCAACCTGGTCTACAGAGAAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCCAAAAAAGAGAGAAATAAATATTATTAATACCAATTAATATATGAAGAAACTAATATTCCAGATCAGCAATTTACTTAAGATTCTTAGCTAAGAACTGACAAAGTTGAGATTTGAACTACTCTCTGCTTTCTCAAAGTGTTTTCTTTGGCACCTCAGATAATTCTTTCACCTCTGAGGTGACCTATGTCACTCAGTTCCTGTGGAGCACCTACCCCAATCTAGAAATTGAGCACCTATAGCATAAAGGCAGTTCTATGCTAAGGTGTTTGCTGTTCAGTTGTATGGTTGCAAGTGAGCTTTTAGTGATTACTCTTGATCTGGCATACTGCTAAAGGCAACAGGGAATGGGAACTTCTCAGTCACTGTTCTATTGCTATGTTGAGAGACCATGACCAAAGCAACTGTTACAAAAGAAAACATTTAATTGGGGGCTTCCTTACAGTTCCAGAAATTTAGTCCATTATTGTCTTAGCTGGGAGTGGCAGCGTGCAGGCAGTCACTGGAGTAGCTGAGAGTTATTATCCTGATCCATAGGCAGAGAGAGACAGATATACTGGCTTCACGTAGCTTTTGAAACCTCAAGCCCACCTCTTGTGATATACTACCAACAAGGCTCTACCTCCTAATCGTTCTAATCCTTTCAAATAGCCCCACTCCCTGATGACAAAGCATTCAAATATGTGTGCCTGTGGAAGCCATTCTTATTCGAAGCACCAAAGGGAAACTGAGATGTAGAATAGATGAATGGAGATGATGGTGGGTTTTTTATAGCAGGGCATTTCTGATGACCAGGCCTAGCCTAATTGTTCTCTGTCCAGGCTAAACAAACCTACCTGTGTGTACTCACTGTTTATTCCATGGAAAGTTTGTACTATTCCTGTTTGCCTGTGTCATTCATTGTTAATGGGAGGCTTTCTACCTAGCTTTTCTTAACAGGACTGGTATTCAGGTTAAGAAAATCATCATCATCTTCATTTATTTTTTTTTTGTTTGTTTAATTAACTTCCTTTCCTGATGTTTGTCCACGACTGGTATGTGCACCACCCTCCTCACCCAAG
Seq C2 exon
ACTATGCTGAACAGGTCCGAAACTTGCAGAAGATAAAAGAGAAGCTTGAAATTGCATTAGAAAAACACCAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types