HsaINT0070846 @ hg38
Intron Retention
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr16:20326338-20327580:-
Coord C1 exon
chr16:20327467-20327580
Coord A exon
chr16:20326468-20327466
Coord C2 exon
chr16:20326338-20326467
Length
999 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGGTCTTTTCTTTCCCATAGCTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTGCACCAATTGAGGAGAGACACATGGGTGGGAAATTGCAATAAAAAGACGGCCCACAGCAGGCTGCATTCCCATGGCTGGCCAGAGGAGGAACGCTTTGTGTTCTCATCGGAG
Seq A exon
GTAAGTCCTGCTTTAAGCCCCAGGAGGCTTCCTCCTAATCCTGGGAAATCTTGATCCACTGGACATGCTAGGATTCTTTGTTTCTGGAAATTTTTAGAACCCAGCAAGTAGTTTGGACCCTGGCCATTGTCAAGTGCTCCAGGTACCACTCTATGTCCAACTCAGTCATGCTTCCAGTCATCTGCGATGCTCCAGGCCTACGGACGCCACCCTCTTCCTTGTCCCAGATATTCCCACCAGGGAACTAGGTCTCTATTGGGATCTCATCTCTAAGAATCACCAATCCTGGGTGCTTCCCTATCCCTGCTGTCTCATAGCATACTCATGGTATCCCTGCCCGAAACCGATCTCTATTTTCCACTGAAGTCTTCCAGAGGTTGTAGGAAGTTATCCAAAGATTTGGCCATTTAGGGAAAGTATTTCCCAGAAAAGTAAATGCCATCCAAATGCTGGCAGGCTTTTTTGCAGCTCTTTCTTTCTGCCTCGCCACCGCCCCCAACCCCCATTGATTTATTTATTCATCCTTAATCCTCTACTGAGTACTCCTTGTGTGCCAGATTCTGTACTAGGAGCAAGGAACATGAGGCTCGGTTTGGCATGGTTCCACAGTCACAGAAATCTACATCCATAGAGGACATTTCAGGGGGCTCTTAGCAGCACCCAATGCATAAAACTAAGAAAGGGCAGCCATTACTTTTGTGTGCAGGTATTCACAGGTACCATATCCCTTTTTCTCTATCCAATCTCCAAAGAGCCTCTACTTCCACCTGAGCAGGGACCATCCTGAGACCTTTCTAGGACATTCTGCAGTACTAGCCAGCTCTAAGCTTGCCTTTGGTTTGCTTACTGTCAATTTTATCACCCATTATCTCGCTCTATCTGTCCATAAGTCACACCTACTTTGAAACAATGCAGCTCTTTATGAAGGAAGTCAACGGATCTGTTTCTAAGAACATAGACCTATGCCCTAATCTTATCTTGGTCTTTTCTTTCCCATAG
Seq C2 exon
CTGCATGGGAAGTCTGCATACAGCAAAGTGACCTGCATGCCTCACCTTATGGAAAGGATGGTGGGCTCTGGCCTCCTGTGGCTGGCCTTGGTCTCCTGCATTCTGACCCAGGCATCTGCAGTGCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347:ENST00000302555:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACCAATTGAGGAGAGACA
R:
GCACTGCAGATGCCTGGG
Band lengths:
238-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development