MmuINT0072409 @ mm9
Intron Retention
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:126600675-126602786:-
Coord C1 exon
chr7:126602699-126602786
Coord A exon
chr7:126600811-126602698
Coord C2 exon
chr7:126600675-126600810
Length
1888 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAGCCTTTCCTTTTCTATAGATT
3' ss Score
8.82
Exon sequences
Seq C1 exon
ACACTGGGCAGGGAGGAAGGATACTTTGGGTTCTTCTCTTATGGTAAGTCCTGCTCCAAAGCCCAGGAAGATTTAGTCTCCCTTGCAG
Seq A exon
GTGAGTTTAACCTTCTTTGTGTACTGGACTTACTAGGGCGATCTGCAAACTTTCTGAACCCAGAAGTGACTCTGGACCTTAACTCTTGTTAATTGTTCCTCAGCTCAGTTAGTTCATAATCCAAGTCACCTGCTGGACAGTCCAAGGTGTCCACTTGGGTTGGCATCTCTAAAAGCTTAGTCCTGGTTACTCCCCTGTCTCTGTTCTCTCATCATGCATTCATGATACTCCATCAGAAACAGGTTTGCAGCCCCAAGTTCTATCTTTTAGAGGCTGCAAGAAACCATACAGAGGTCCCCTTTCGGGGCACAGAAGGGTAAATGTCACTGAAGTCGGCAGACATTTTTGTCTTTCTATTTCTTATTTACTTCTTTGCTTGCTTATTCCTTCATTAATTATTTCATCATGTAATTGTTTTTAAACTGGGAAGCCAGTGTATGCCCTCTTCTGTACAGAATGAAAGGGGCTTAGAATTCAGCCTAACATAATGCTACACTTGTGAAATCTCAGAGCGTCTTAGCAGAACCTGATGCACATATATAATCAAGATAGATAGAACTCTCCTCCCTAGGTACCAATAATTACTAGAATTCTTGCCTTCAGTTTCCAGAGAGTGTCTTCTGCCACCTGTGCAGGGACTTTGCAAATATTGCTCTTGGACACTCCACAGCACTGACCCCCCTTTTGCTAGCTTGCTATTGATTTCTTCTTGGAAAGCCCCTATTCCCATCCCACTCCATTTCTGTATGTCATGCCAATAGTTTGGGTTCTGAGAACCTGGACCTATTGCCATATGTTGGTCATGTATGTCCATATTTGCAGAGACACAGCTGTATAAATATTGTTTGGATTATATACTCCTTTCTTTCTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATATTATCCCCTTTCCTAGTTTCCCCACCAAAAATCCCCTCCCCCTCCCCCTGTTCCCCAACCCACCCACTCCCATTCCTGGTCCTGGCATTCCCCTATACTGGGACAAAGAAACCTTCACAGGAGCAAGGGCCTCTCCTCCCATTGATGACTGACTAGGCCATCCTCTGCTACAGATATAGCTAGAGCCACAAGTTCTACCATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGAGCTCTAGGGGTACTGGTTAGTTCATATTGATGTTCCTTCCACGGGGCTTCAGTCCTCTTCAGCTCCCTGGGTACTTTCTCTGGCTCCTTCATTGGGGACCTTGTGCTCCGTCCAATGGATGATTGTGAGCATCCACTTCTGTATTTTCCGGGCACTGGCAGAGCATCGCAGGAGACAGCTATATCAGGCTCCTGTCAGCAAGCTCTTGTTGGCATCTGCCTAGTGTCTGGATTTGGTGGTTGTTTATGGGGTGGATCCCCAAGTGGGGCAGTCTCTGGATGGTTGTTCCTTCAGGCTCTGCTCCTAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCCATTCTATGAAGGAGCGAAGTGTCCACACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTGGTTTTCAAATTGTATCTTGGGTATTCTAAGTTTTTGGGTTAATATCCACTTATCAGTGAGTGAATATCATGTGTGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATATTTTCCAGATCATCCATTTGCCTAACAAAACTTCTTCATCAACAAAACGGGACTCATAACAATACCTCCCTATGGAGTGGTTCAGAGACCTAAGTAAGACAAATTATGAAAAGGGCCTCTAGCAAATAGGGTCACATGATAGATGCTGAACCAATATGAGTTTCAACCTTACCCAGGGGCTAAAGGTTTGTTAGCTTGACCTGATGGGAGCCTTTCCTTTTCTATAG
Seq C2 exon
ATTTATGAAGAATCTGCAGGCTGCAGAGTAACCTGCAAGCTTCACTTTATGAAAAGGATGGTGGGTTGTGACCTGCTGTGGCTGGCTGCAGCCTCCTGCGTTCTGACACTGGTATCTCCATCTACAATACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-Gp2:NM_025989:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGCAGGGAGGAAGGATA
R:
CTTGATGTATTGTAGATGGAGATACC
Band lengths:
222-2110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: