RnoINT0066488 @ rn6
Intron Retention
Gene
ENSRNOG00000015716 | Gp2
Description
glycoprotein 2 [Source:RGD Symbol;Acc:621695]
Coordinates
chr1:189181060-189182306:-
Coord C1 exon
chr1:189182265-189182306
Coord A exon
chr1:189181196-189182264
Coord C2 exon
chr1:189181060-189181195
Length
1069 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GAGCCTTTCCTTTTCTATAGATT
3' ss Score
8.82
Exon sequences
Seq C1 exon
CACACTGGGCAGAGGAAGGAGGATACTCTGGCTTCTTTTATG
Seq A exon
GTAAGTCCTGTTCCAAAACCCAGTGGGATTTATTCCTCCCAGTGAGTTTCATCCTCTTTATGTCCTGGACTTGCTATGGCCATCTGCAAACTTTCTGAACCCAGAAGTGACTCTGGGCCTTAGCCATTGTCAACTGTTCCTCAGATAAGTCAGTTCATAGTCCTACTCATAGGTGTCCAATTGGGTTGGCATCTCTAAAAGCATAGTCCTGGATACTCCTCTGTCTCTGTTCTCTTATAATTTATTCATGATATTCCATCAGAAACAGGTTTCTAGCCCCAATTTCCACCCTTTAGAGGTTGTAAGAAATCACCCAGAGGTCCCCTTTCAGGGCACAAAAGGGTAAATGTCACTGGAAGTCAGCAGACATTTTTTGTCTTTATATTGTTTGCTTCTTTCTTGCTTTTTCATTCATTAATTATTTCATCATGTAATTCTTTTTAAACTGGGATGCCAGTGTATGCCCTCTTCTGTACAGAGAGAAAAAGGCTTAGAATAGTCTCTAACATAGTGCCACTTGTGAAATTCCAGAGTGCCTTAGCAGAACCTGATGCATATAATCAAGATAGATAGAACTCTCCTCCCTAGATACCAATAATCATTAGAATTCTTGCCTTCAATTTCCAGAGACTGTCAGTTGCATCTACGCAGGGACTTTGCAGATACTGCTCCTGGAAAGTCTACAGCTCTGACCCACCTTTTGCTAGCTTGCTATGGATTTCATCTTGAAATGCCCGTATTCCCATCCCACTCCATTTCTGCGTGTCATGTTAACAGTTTGGGTTCCGAGAACCTGGACCTGTTGCCATATGTTGGCCATGTAATGTCTGTATTTTCAGAGAAGTTGCTGCATCAATATTATTTGGATTATGTACTCTTAAGACAAAACTTCTTCACCAACAACAGTGCCTTTCTGGAGTGGTTCAGAGACCTAAGTGAGACAAATCATGGAAGGGGCTTCAAGCAAATAGAGTCATATGATAGGTGCTGAGCCGACAGGCGTTTCAACCTTACCCAGGGGCTAAAGGTCTGTTAGCTTGACCTAATGTGAGCCTTTCCTTTTCTATAG
Seq C2 exon
ATTTATGGAGGATCTGCAGGCTGCAGAATAACCAGCAAGCCTCACTTTATGAAAAGGATGGTGGCTTGTGACCTGCTGTGGCTGGCTGCAGCCTCCTGCCTTCTGACACTGGTATTTCCATCTACAACACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015716:ENSRNOT00000021249:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]