HsaINT0070848 @ hg38
Intron Retention
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr16:20320262-20322979:-
Coord C1 exon
chr16:20322869-20322979
Coord A exon
chr16:20320474-20322868
Coord C2 exon
chr16:20320262-20320473
Length
2395 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTTCATCTCTGCTTTGCAGATG
3' ss Score
10.89
Exon sequences
Seq C1 exon
ACCCATCCACTGTGGAGGACAAGTGTGAGAAGGCCTGCCGCCCCGAGGAGGAGTGCCTTGCCCTCAACAGCACCTGGGGCTGTTTCTGCAGACAGGACCTCAATAGTTCTG
Seq A exon
GTGAGCTGCTCACTGGGCAAGTAACTACCATCCTGAGGGGGCAGGGCAGGAGGGAGGGAGCTTTAGAGGGTCAAGATAAGGTATAAAGCAGAGTCAGGGGCATGGACCTGAGGTCAAGGGAATGTGGGCTCTCCAATCCATTTGCTGTAAAGCCAGTGGGTTTGCAAGGATAGGAGGGCAGGGTTGGAGCAAATTTCCAGGTCAGCTGCTGGGCCGTGGCCTCAGGAAATGGTTCTGACATGGGCAGGCTTGACCCCTGAGGGATGAAGACACTGAAGATGATAATTCTGCTAATGTAGGAGCTATGTTTTCATAGCCACAGGGTCTTCATGTCAGGGACATGGGCAGACTTCTGGGGACAAGTCACTACTGTCTCTGAGCCTGAATATCCTCATCTGTAAAATGAGGATAAGGTAATAATAATACCCACCATACAGGGCTATTGTGAGAACTAAATCAGAGCAGTCCAATTGGGCAGGCTCAGGAGGTGATGAATTTCTCGTCCCAGGAGGTAAGCAAGCAGAGTGAGATGTCCCATGGGTAGGGATGTCATAGACAAACAAGCACTAAGCCCTGGACAGGGGATGGATGAGCCTCCCACTGAGATTATTTCCCTCCATCACTGAACTCTAACAAGGGCCTTTGATCTTGCCTTTGGCACAAGCATGCCTTCCTCTGAGCACACTACAAGTCCCTATGGAAGAGAGAGTGTTCTAGGCAGCAGGACAAGAAGGAGCATGACACATTTGGAAAACGGAGCCACAGTGTGAACAGGGCGATGCTTAGATGTGCCCAGCAGAAGCACCCTGGGAAATGAGGGGTAGGGAACAACCAACAACCTTGATCTCCTTGAAGACTCTTTCTGCTCATTGAGTGGATAAGGCCCCAGAGATTCAGTGTGGTTTTCTGGGGTTTGGGCCCATCACAGAGTCAGATTTTGGGCTTTAAGGAGGCCCTCCCTGTACCTGGATGGGCTCCAAGGACAGTCTCAGCTGACTGAGTGAGCAGGTGGCCTGCCTCAAGTCTTCATCAGTGGCCAGCACAATGATGAGTGTCCAGTGGGCCCCATTGCTTGCAGACACATCCCTCTGTGCTCTGACTTTCACTTCCATCTCCTTCTCCCACACCCTGCTCTCATTTTAGGTTCCTGCGCCTCTGAACTCTGAAATTCCACAAATGCACCATTCCCTCTATCCCATCTCCATGCTTTTGCCTCTCCTGTTCCCTTAGCCTGGGATGCGTTCACTTGCTTTACTGACTTGCAAAACTCCTACCCACGTTTCAAATTTCATACCACTGTGAATCCTTCCCTGACTTCACCAAGAGACTCAGATAGACCTTCTTCTCTGCTCCCCCTGCATCTGTACATACTTCTGTCTGTATCTTTATCATATTGAAGTATAATAAACTGTTGATATGTTGGTGTTTACACAAGACCAAGAAATCCTCATGGGCCAAGTCCATGCCTTATTTACTTCATGTTGAATGCACCTAGCATTTGAGAAGGTGGTTGGTAAAGTGGCTCATGCCTGTAATCCCAACAGTTTGGGAGGCTGAGGCCGGCAGATCGCTTGAGGTCAGGAGTTTGAAACCAGCCTGGCCAATATGGCAAAACCCCATCTTTATAAAAATACAGAAATTAGCCAGGTGTGGTGGCTCATGCCTGTAATCCCATGCCTGTAATCCCAGCCTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCAGGAGGCAGAGGTTGCAGTGAACTGAGATTGGACCACTGCACTCCAGCCTGGGCAACACAGCAAAACTCTGTCTAAAAAAAAAAAAAAAAAAGAGAGACAGAGAGAGAGATAATGTGGTTGGTAAATATATATTGAATCAATGCATTAATGAATGCAATAGAAACTGTCTTCCTATTAGTTTACTATTTGTCTCCCCTATTCAACTGTTAGCTCTATAAGAGTGGGAATTTTTTCAGTTTTGATAAGTGTTGTAGCCCCAGTGCCTGGCAGATAGTAGATTCTCAAGAAGTTGTGTGTTGAATAAATGTTGAGTTAAAATATGATAGCTCTGAACTTGGTCAGATGTGCTGACTCAACAAGGTAGCATATATCTAACTTTGATTCTAGTATGGAATGCAAGTCCATCCTGCCTCCCCAAATAACACAATCCCCAAGAGGAACTAGACTAAAAAACCTTAGCAAGCCTGCACATAGGACACTTGGAAATCTTGAATGAGGGGCCCCCTTTGCCAGTCCCACCTACTGCCAGCCTAGGCATGAATTCCATCTGGATCCCAGGGACCTTCTAGTCTACATAATCTTCTGGGTCATGGAGATGTTACCAAAGAGTAGGGAAAGTGGGCTTCCAGACTCATGTCCATTCTACTTGCCTTCATCTCTGCTTTGCAG
Seq C2 exon
ATGTCCACAGTTTGCAGCCTCAGCTAGACTGTGGGCCCAGGGAGATCAAGGTGAAGGTGGACAAATGTTTGCTGGGAGGCCTGGGTTTGGGGGAGGAGGTCATTGCCTACCTGCGAGACCCAAACTGCAGCAGCATCTTGCAGACAGAGGAGAGGAACTGGGTATCTGTGACCAGCCCCGTCCAGGCTAGTGCCTGCAGGAACATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347:ENST00000302555:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(24.1=85.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development