MmuINT0072413 @ mm10
Intron Retention
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:119452133-119452954:-
Coord C1 exon
chr7:119452844-119452954
Coord A exon
chr7:119452345-119452843
Coord C2 exon
chr7:119452133-119452344
Length
499 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTCACTCTTGGCTTCCTAGACT
3' ss Score
6.62
Exon sequences
Seq C1 exon
ACCCCTCCACTGCACCCAAGAATTGTGAGATTACTTGTCGTCCTGAGGAGGAATGTGTATTCCAAAATAACAACTGGTCCTGTGTCTGTAGGCAGGACCTCCATGTTTCTG
Seq A exon
GTGAGCAGCTCCCAGGGCTGAGTAGGCAGGGCAAGAGGAAGGAGGCTTGGGGATCAGAAAACGGCAGGGACCAGAGTCAGGGGCCATAGAATGGACATTGGGAAATCTTGAGAGTTATTTGGGCCACTTATTATGAAGCCAGTGGATTTGCAAGGAGGAGAGAGGGTAAGGCCAGACAAAGCTTCCAGGTCAGCTGCTGGAATACTGTAGCAACAAGTGGCTGTGGTGTGGGCATCTGGCTTTGGTTTAGTCTGGAATACAGGAGGACCATTTTGTTTTCCCAATACCAGCTAAGTCACACATGTACCTCAGATGCTTAGAAGTCTTGGACCAGAGGTTTATCAGTCTAAGTGTGATTTCTATTGGGGTCCCAGACCTCATCTAGTCTATTCAGCAACTTGGTGGGCCTGATGGATGTACTACCAGGCAAAGAATGTAGATGCCCCTTGTTGTTTTTAGTCCCCTGTCTGCTCTGCTGACCTCACTCTTGGCTTCCTAG
Seq C2 exon
ACTCTCAGAGTTTGCAGCCTCTTCTGGACTGTGGAGATAATGAGATCAAGGTGAAGTTGGACAAGTGTTTGCTGGGAGGTATGGGTTTCAAGGAGGAGATCATTGCCTACCTCAATGACCGGAACTGCAATGGTACCATGCAAGATGAGCCCAACAACTGGGTGTCCATGACCAGCCCTGTTGTGGCTAATTACTGTGGGAACATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954:ENSMUST00000033255:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(24.1=85.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACTGCACCCAAGAATT
R:
CTCCAGGATGTTCCCACAGTA
Band lengths:
320-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types