RnoINT0066492 @ rn6
Intron Retention
Gene
ENSRNOG00000015716 | Gp2
Description
glycoprotein 2 [Source:RGD Symbol;Acc:621695]
Coordinates
chr1:189176152-189176956:-
Coord C1 exon
chr1:189176846-189176956
Coord A exon
chr1:189176364-189176845
Coord C2 exon
chr1:189176152-189176363
Length
482 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTCCCTCTTGGCCTCCTAGACC
3' ss Score
9.04
Exon sequences
Seq C1 exon
ACCCCTCCACCGCACCGAAAAAGTGTGAGATTGCTTGTCGTCCTGAGGAGGAATGTGTATTCCAAAATAACAGCTGGACCTGTGTCTGTAGGCAAGACCTCAATGTTTCTG
Seq A exon
GTGAGCAGCTCCTCGGGCTGAGTAGTCAGGGCAAGAGGCATGAGGCTTAGGGGGTTGGGAAGGGGCAGGGACCAGAGGAAGGGGCCATAAAATGGACATTGGGGAAGCCTTGAGAGTTACAAGCCAGTGAGTTTGCAAGGGTGAGAGAGGGCGGGGCCAGACCAAACTTCCAGGTCAGCTGCTGAAATACTCTAGCAACAAGTGGCTATGGTGTGGGCTTTGGTTTAATCTAGAATAAAGATGAAAACAGGAGGACCATTTTGTCTTCCAAACAGCAGCTAAGCCACATCTGTACCTCAGATGCTTAGAAGTCTTGGAGCAGAGGCCTCCTTATCAGTTTGAGTGTGATTTCTATTGGAGTCCCAGACCCCATCTAGTCTATTCAGCACCCTGATAGGCATGGGGCAAGGCAGAGAATGTAGATGCCCATCATTGTTTCTAGTCCCCTCTTCACTCTACTGACCTCCCTCTTGGCCTCCTAG
Seq C2 exon
ACCCTCAGAGTTTGCAGCCTCTTCTGGACTGTGGGGCTAATGAGATCAAGGTGAAGCTGGACAAGTGTTTGCTGGGAGGTCTGGGTTTCAAGGAGGACATCATCACCTACCTGAATGACCGGAACTGCAGAGGTACCATGAAAGATGAGCCCAACAACTGGGTGTCCACGACCAGCCCTGTTGTGGCTAATGACTGTGGGAACATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015716:ENSRNOT00000021249:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(24.1=85.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGCACCGAAAAAGT
R:
TCCAGGATGTTCCCACAGTCA
Band lengths:
318-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]