HsaINT0071260 @ hg19
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6736603-6737633:-
Coord C1 exon
chr19:6737468-6737633
Coord A exon
chr19:6736723-6737467
Coord C2 exon
chr19:6736603-6736722
Length
745 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GCCTCCTTGGTCTCCGGCAGGGG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GGGCTTGGGCGCCAGAGGCGGAGTCGGGGAGGAGGTGGCTCCAGAGATGGCAGTGAGCGAGAGGAGGGGGCTCGGCCGCGGGAGCCCCGCGGAGTGGGGGCAGCGGCTACTTCTGGTGCTGCTGCTGGGTGGCTGCTCCGGGCGCATCCACCAGCTGGCGCTGACG
Seq A exon
GTGAGGCCCGCCGCGCGAGGGTCTGGGGTCGGTGGCGCAACTTTGTCTCGGAGAAGCCCCCTGGCTTGGAGTGGTCTCGTCCGCCCTCCCCCGTCCCCGAGGCGGTGGAGTGGTCCGGCGCCCCCCGTTTCCGGGCCCGGAGTGGTCTCGTCCCGGGATCCCCTTCGGTCCTCCGGATGGAGTTGCCGGGTCCGCCTCGCTGGGGTCGGCCCCCTCCCTTCGGGGGCGAGGCTCCATCTCTTGGGGACTACACCCCCCTTCCCCCCAACTGGGTCTTAGTCCTTTAAATTCTTGGAATCACTTTTGGGGCGCTAGAGACCCTGGAGCCGCACAGCGGGGTCCTGGGGGGCTATAGAGTGGGGTCCTCTGGGCACTTAATGGGATTTGGGGGGTTCTGTTGAAATATTGCTGGGAGCTCAACTGGAATGTAAAAGTTCTTCGGGAAGGTGAAGGTCAGGCACGCCGAGGTGAATAACTGTTCTCCGGGCGGTGCTCACCCCAGTGGGGAGACTTCCAGGTGCCGCAGGATCTCTGTTCCTGGGTTCTCAGAACAGAGGTCGGAGAATGCAGGACCACCCTTCCCCTGCAGGGAGGAAGTCCCTCTCAACTTTCTCTTGTCATCCTCTGGGCCTGTCCTAAATAGAGGGGTACCAGGAGGCCCTTCTGGAGGTCCTCGTGCCAGACCCCTGGGGCTGGGCAGGCGGAAAGAGGTCTGAACTGCCTCTGCCTCCTTGGTCTCCGGCAG
Seq C2 exon
GGGGAGAAGCGAGCGGACATCCAGCTGAACAGCTTCGGTTTCTACACCAATGGCTCTCTGGAGGTGGAGTTGAGCGTCCTGCGGCTGGGCCTCCGGGAGGCAGAAGAGAAGTCCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-GPR108:NM_001080452:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCGGAGTCGGGGAG
R:
CAGCAGGGACTTCTCTTCTGC
Band lengths:
273-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)