MmuINT0072821 @ mm9
Intron Retention
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57386187-57387064:-
Coord C1 exon
chr17:57386934-57387064
Coord A exon
chr17:57386307-57386933
Coord C2 exon
chr17:57386187-57386306
Length
627 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
GTGTCTTTGGTTTCCTGCAGGGG
3' ss Score
11.2
Exon sequences
Seq C1 exon
CAGAGATGGCAGTGAGCGAGAGGAGGGGGCTCAGCGGCGAGAGCCCAACGCAGTGCCGATGGGGATACTTGTCGCTGCTGGTGCTGACGCTGAGCGGCTGCTCAGGCCGTATCCACCGGCTGACTCTCACA
Seq A exon
GTGAGCCCCGCAGGCTTGGCCTCGTTGTCTCCCCCCATAGCTCCGCCGGTGGATGGAGCAGCCGCACCCCCCACTGCAGGCCGCTAGTGGTCTCGTCCCGGGGTCTCCCCGCCCGGTGCTCGTAATGGGTTGGCCTGGCTTAGAGGGCGGGGCTTCATCTCCTGGGACCCCTGACTCCTGGCGCTTAAACTTTCAGGGAACACTTGGTAACAACCATAGGACCTGGGAGGAAGGGGTACCACCTGGTAGGATCTTCCTGGAATTCACTTAGGGGAGTGACAGGAGACTACTTTCAAAATTTAGCCCAGATAGAATCGAAAACTTTTCTGGAAAGTCGAAACTAGTCACACCAGCCTATGTAGCCCGCTCTCGGGGTGGTGCACGTCTATATGGGGACTGTCATGGGGTTGCCAGGGTTTCACCCCATGGACACACAACCCCACCCTCTAGCTGCCTCGGACTGAAGTAGGAAAATGTCACCAGCACCAATACGATGTACCCAGGAAGGCTTTCTCACATGCTCCTGTCCTGAATAAAAATGTATAGAGACGCTCAGGGAAACACGCCGTCGTGCTGGACTTGGTGGGGAGAGTGCCCTTGTGCCACTGTGTCTTTGGTTTCCTGCAG
Seq C2 exon
GGGGAGAAGCGAGCTGACATCCAACTGAACAGCTTCGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGACTCAGCCTCCAGGAGACAGAAAAGAAGTTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-Gpr108:NM_030084:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAGCGAGAGGAGGGG
R:
TGGCAACTTCTTTTCTGTCTCCT
Band lengths:
239-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: