RnoINT0066908 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9704346-9705228:+
Coord C1 exon
chr9:9704346-9704486
Coord A exon
chr9:9704487-9705108
Coord C2 exon
chr9:9705109-9705228
Length
622 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
GCCTCTTTGGTTTCCTGCAGGGG
3' ss Score
11.17
Exon sequences
Seq C1 exon
GTCGCAGCCCCAGAGATGGCAGTGAGCGAGAGGAGGGGGCTCAGCGGCGAGAGCCCAGCGCAGTGTCGATGGGAATACTTGTCGCTGCTGGTGCTGATGCTGAGCGGCTGCTCAGGCCGTATCCACCGGCTGACTCTCACA
Seq A exon
GTGAGCCCCGCAGGCTTGGCCTCGCTGTCTCCCCCCCCCTTAGCTCCGCCGGTGAATGGAGCAGCCGCACCTCCCACTGCAGGCTGCTAGTGGTCTCGTCCTGGGGTCCCCCCGCCGGGTTCTGGTAATGGGTTGGCCTGGTTTAGGGGGGGCGGGGCTTCATCTCCCAGGACCCCTGACTCCTGGCGAATTTAATTTCAGGGGGACCCTCGGTAACAACCATAGGACTTTCTGAGAGGAGGGGGTACCTGGTAGGATCTTCCTGGAATTCACTTTGTGGAGTGGTGGAAGACTACTTTGAAAATTTAGCCCAGATAGAATCGAAAACTTTTCCAGGAAGTCGAAGCTGTTCACACCAGCATGTGAAGCCCACTCTCAGGGCAGTGCACATCAATATGGGGTCTGCCATGGGTTTGCCAGGATTTCACCCCCTGGACACTCAAACTCACCCTGTAACTGCCTGGGACTGAAGTAGGAAAATGTTACCAGCACCAATACACAGTACCCAGGAATGCTTTCTCACGTGCTCCTGTCCTGAATACAAATGTATAGAAACACGCAGTGGGGCTGGACTTGGTGGAGAGAGTGCCCTTACTGCCACTGCCTCTTTGGTTTCCTGCAG
Seq C2 exon
GGGGAGAAGCGAGCTGACATCCAACTGAACAGCTTTGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGACTCAGCCTCCAGGAGACAGAAGACAAGTTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCAGAGATGGCAGT
R:
TGGAAACTTGTCTTCTGTCTCCTG
Band lengths:
254-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]