GgaINT0124982 @ galGal3
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
NA
Coordinates
chr17:6410900-6415309:+
Coord C1 exon
chr17:6410900-6411004
Coord A exon
chr17:6411005-6415183
Coord C2 exon
chr17:6415184-6415309
Length
4179 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TAAACTCTTCTTTCTCATAGGAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
ATGGCGGCCTGTGGCCTTTCCGCCGCTCTTGCTGTGGCTGTGCTGGGGCTGGCGTTGCTCTGCGTGGGTCCGGTCGGAGCCCGCGTCCATCATCTCACCCTCAAA
Seq A exon
GTAAGGTTTGCGCCGTAGCATCCTTTGGGCTTGGTCCTGGGTGGGGTGAGGGGAGCGGTGGGCCCGGCCTGATGCTGTCTCCTCAGGCTGGGGGGTCTTCTCTTCTTCTTGGGCCTGTCGCCCTGTGCCTGGCCCGCTGCCTGGCTCGGCCCTTCGCCGCCACTGCTGCCCTCCCAGCTCTCCCGCTGTGTTTCGGCCTGCTGAGGCCCCGGTTGGTTTTGCTTTTGTCGTTACTTTTCCCGTTCTCGTGCGGGTGCCCCTCGTCTGTACCGTGGGGAAGCGCCTGCATCGAGGTGTGGGGGTGCGGCTCTCCGCGCGGTTACCGCGCAGTGCGGGCTGTGGCTGAGGGCCCGGTGTGCGCTGGGCGGTTCCCGAGAGGACTCGGGATCGCTGTTAATCCGCGTTCCGCGTGTTCTTCCCGTCCCATCCTCTGTCGCTCTACTCTGAAGGCTGCGGTGGTGCTTTGTTTCTTTTTACTGATGTGCATTCTTCGCACTGATCAAGTGATTGGTAGAGGTAGAAGAAGGAATAGGTGCTGACTACTCTCTACTTCAGCTTAATAGACTTAAGGTTGTACTATTTGAAAGATCTCTCTGTGGTTTTGTACCCACGTTTGAGGACAGCTCGTTACCTGGGGGGCAGTAGGGCAGGCTGTGGTTGGAGCTGCAGCTCCTGACTCATTCATAGGGAGTTTTCCTGTCTGTGTAGTAATCTAAAATGCAATGGAATGAACATTGTTCTGCCTCAGGAAAAGTTAACCTTCCCTTGAAACAACAAATTAGGAAGCTTTTATTGGTTACTTTGCTGCTTGGAAGATTTCCGGACCAACAATTGGGTGCTGGAAGTTTATACTGAGCTGGTGTTTCTGTTACATAGTAAACTTTTGAGCTGGTTTCAAGCAAACCTCAGCAGCAAACATGGCTGTTTGTAGTTCCTATTCAGGCATTTCTAGACTGCAACGATATAATATCTTTGATTTTTTTGGATTTTTTTTCATAATTACGGTCAATACGAAGTATTATCTCTGCTGAGTAGTATAATTTTCATGTAAGTTACAACACTGGCCTACCAAACACTAAGGAAAACAGAAGTGCTTTCATGCCTTTGTACACCTGTGCAAACGTGAGCTTCAATGCTGGAGTGCAGTCTCCTTATTTGTGATTTTACAGCACTTTATGTAAACATCCGGTTCGCTAACGACAGCCCTTCACAGTGAACCAGCCCTTCTGGTGTTGGTGCTGCTGGCAACATGTGCTCTGAGGCTGAGCTGAGTTACAGGTATGGGCTTCTTCAAACGAGCTGCTGTTGCCTAAGTTAGAAAAGCTTTCTTCTCTCTTGGTAATTAGTGTGCTGAGGTGAAGCTTTTCTGTTTTTCTGTGTCTTGAGTGGCTCTCTTCTAAAAATAGCTTTTTATCTTTATGGAGATGTGGAAAGTGAGGTATTTCTCTTGTTTCTGAAGATGAATTTGTTTGAATCTTTCTGCTACAATAATGTCACCAAAGATGACTTTCTTGCTTGATAACACTCGATATCAGCTTTGTTAAATTCATATGGTAACCTCTAAAAAAAAAAAAAAACAGAAAACACTTTAAAAAGTTTTAGAAAATGCATGGAAACAATTCTTAGAGGTTTCCATAATGAGGAGGTAACGTTTCTGGTTACCAAAACTATGGTGTGTGCTAGGGTTGTTTTTGGAAGGTGTGTTTTGTTTTGTTTTGTTTTATCCCAGTCTCAGCAACTGGAAGCTGTGTTACGGAAGCCTCATGCTTTGCGCAATGCAGTGGCAAACTGCTGCAGAGAATGGGGAAGTTTGTGTAGCTGAGGCCTATGTCAGGCATGCAGTTTAATGCTAGTCTAATGCTAGTCGGCTGCTGAAATTAAGAAGTTTCTAGAGAGTTAACAAGAGGAGCCATCCAACCGACAAGGCTGTGTAGCCGTCTGTGGCGTTGCTTTCTGATTAAAGTGAGAGTTATCTTTGCCATGCAATGGTTTCCAAAAGGGAAGGAAAACTCCCTCCTATGTAATGATATTGTCTGAATTTCAACTTCGTGTTAAACTTCTGTGTGGGAGATCGTAATTTCCAGTGGTTGTTTCTGTTCATGAATCCTTGTGGCCTTTTTATCTTGTTAAGTCTTGGGTTTCAATTGCACAAGTTGAAAAGCCCTTCTAAAACAACTTGGTTATTACTAGGCTTACACAGATAATGCAGTTCCTTCCATATAAGGGTCAACACCCTCAATTAAAATTTTCTCTGTGCTAATAGCATCATCCCAATTACATTTTGAGTAAAATGTTAAATAAGAATAATTTGTGGATTCTGAGCTACAGAATCTTGGATAACGCTTCTTTTAGTCATGTTCAAAAAGTGCAGGATATTTGCACACTGAAGTATTCCTTCGTACTGGTTCACCTCTTTGTTATAAAGACACAATCTTAGGTTTCTGAAGTCAGAAGTTGAGAGATTATAAACGAAAGCCATATTTTTAAATGGTTAAACCTCTTGTGAAAGGTGAGACAGCTATTGGTAAGCCTGCAACTTTAAGCTGCCAATATATGGAGCAAGGGATGCTCTTGGAGGATGTGCAGTTGCTTCTTCAGGATCGTGTAAAGCTGAAGGATTTGTGAACTAAATCTGTAAACTCTAAGCACTCAAAGCTGCTATAAAACCAGAGAGGAAAGTGCATGTTATGTGTTAATTATTCTTTGTTGATGTGATGGGCAGCATATTGGTGAACCACTGGAACAAATGAACTTAAATTGAACTGCTTGCAAGAATTTTGAAGTAAGCAGCTGTTTCTCATTGTATTTACAGCATGCAGAAAGCCTTGTGGCTGGGTGATGCTCCGTTTCCCTCCTTGCCCTGCCCCTGACACCCACACATATGATTATCCCTCCAGAAGCGGTTAATACCATACCAGGTGTACAGCTAAAAAAGCTAGTGTTAACCTGCTGGCTGAGAAATTACATTGAAAGCTCTGTGAAATTAACCAGATGGACCACTGCCTCAAGCATGTAAGTGACCTACAGCGTGGAGATAGCACAGCTATAGTGCTCTGTTAAACATGGCATCTGCTGCAAGCCATGTGTTGCTGACTTTATTTCCTCTTCCCAGTGCTAGGGCAACCATCTGGTTATTTGCCAGGTTAACCTGATTCTATTAGGGTGATCTCTTAGCCAACCTGTAACCTAGCTGTGATGTGTAAGGATTTGTGTCCTGCTGTTACGCTGAGTGATATTTGTGTAAGGAAAGTTCTATGCAGAGATACCAAATAGTGTTTGGTGTCAAAGGGGAGAGACAACTACACTTCAAATTTGCTTCTTAATGTTAGTTGTTCTGATTTTCCTTCCAGTTGAAGATTCTGTAGGATTTGAAGGTCTGATTCCATACCTACTCTGTGATTGTTGATTGCAAAGTATTAGGGATATGACCTTTCCTTGTCTGATTGTCAGTATTAATTTTTACTGCTTTTCATGTGTGATCCTTCATGATCTCCTTATGGGGAGGGCAATAAAAAAAGCCAAGTGTATTTGAACTGTTTTCAACTGAGCCAGGTATGAGAAGGCATCCATTCATGCAGTTTCTTTGCCAGTCTGAGAGGAGATGAATTATTCTGCAACTAAGATGAGGGGCAAAAGAGAGGACTGGAATTCCAGGTAGGAAAGCCAACCCAAGTGATTCTGTTTGAGCTCACTATTCCTATTTGGCATTAATCATTGTTTAAGTCTTCAGGCCTTGTGCCTTAGGTAAGAGCACTACAACTAGCTAATTCCTCTTCAGTCTCTTGCAGTGGTAGGGGCTAGGATTCAAACAGTATTTTTCTTGATTTTTTTTTTAATAGCAATTTTATCAGCAGTCCCAGAAATTTAATTTCCTTCAGGCTATTTTTCTTGCATCTTTCTCAGGAGTATAGTCAAGTGATAAGCACTGACACATTTGTTTGAAGCTCATGTTGAGGTTCTTGGAAGAGTTGATTGATTCCAATGAAATAATTGGCTATATCTGAAGGTATCTTACAGAAATTTGCTCTTGGTATGATCGGATTGTTGTTCTGCATGAACACTGGAGTGTCAACCTTGGTCACCCTACTTCCTCTTCTATTGCTCCTGCAGGTGGCTGTGTGTTTAACTCAGCCAAAACAGTGACACTGTACGAGATTTGTAAACTCTTCTTTCTCATAG
Seq C2 exon
GATGATGTGAGGCAGAAAGTGCACCTGAATACATTTGGCTTCTTCAAGAATGGTTTCATGAAAGTCAATGTGAGCAACCTTTCATTGAAGCCACCTGTGAATGCTGATGACAAGAGCAGCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]