HsaINT0071261 @ hg38
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6736592-6737603:-
Coord C1 exon
chr19:6737457-6737603
Coord A exon
chr19:6736712-6737456
Coord C2 exon
chr19:6736592-6736711
Length
745 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GCCTCCTTGGTCTCCGGCAGGGG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GGAGTCGGGGAGGAGGTGGCTCCAGAGATGGCAGTGAGCGAGAGGAGGGGGCTCGGCCGCGGGAGCCCCGCGGAGTGGGGGCAGCGGCTACTTCTGGTGCTGCTGCTGGGTGGCTGCTCCGGGCGCATCCACCAGCTGGCGCTGACG
Seq A exon
GTGAGGCCCGCCGCGCGAGGGTCTGGGGTCGGTGGCGCAACTTTGTCTCGGAGAAGCCCCCTGGCTTGGAGTGGTCTCGTCCGCCCTCCCCCGTCCCCGAGGCGGTGGAGTGGTCCGGCGCCCCCCGTTTCCGGGCCCGGAGTGGTCTCGTCCCGGGATCCCCTTCGGTCCTCCGGATGGAGTTGCCGGGTCCGCCTCGCTGGGGTCGGCCCCCTCCCTTCGGGGGCGAGGCTCCATCTCTTGGGGACTACACCCCCCTTCCCCCCAACTGGGTCTTAGTCCTTTAAATTCTTGGAATCACTTTTGGGGCGCTAGAGACCCTGGAGCCGCACAGCGGGGTCCTGGGGGGCTATAGAGTGGGGTCCTCTGGGCACTTAATGGGATTTGGGGGGTTCTGTTGAAATATTGCTGGGAGCTCAACTGGAATGTAAAAGTTCTTCGGGAAGGTGAAGGTCAGGCACGCCGAGGTGAATAACTGTTCTCCGGGCGGTGCTCACCCCAGTGGGGAGACTTCCAGGTGCCGCAGGATCTCTGTTCCTGGGTTCTCAGAACAGAGGTCGGAGAATGCAGGACCACCCTTCCCCTGCAGGGAGGAAGTCCCTCTCAACTTTCTCTTGTCATCCTCTGGGCCTGTCCTAAATAGAGGGGTACCAGGAGGCCCTTCTGGAGGTCCTCGTGCCAGACCCCTGGGGCTGGGCAGGCGGAAAGAGGTCTGAACTGCCTCTGCCTCCTTGGTCTCCGGCAG
Seq C2 exon
GGGGAGAAGCGAGCGGACATCCAGCTGAACAGCTTCGGTTTCTACACCAATGGCTCTCTGGAGGTGGAGTTGAGCGTCCTGCGGCTGGGCCTCCGGGAGGCAGAAGAGAAGTCCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734:ENST00000264080:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGGGGAGGAGGTGG
R:
AGGGACTTCTCTTCTGCCTCC
Band lengths:
262-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development