HsaINT0071925 @ hg19
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:17858]
Coordinates
chr9:139243149-139244215:+
Coord C1 exon
chr9:139243149-139243219
Coord A exon
chr9:139243220-139244038
Coord C2 exon
chr9:139244039-139244215
Length
819 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
ACAGCCTTACCCCTCCCCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGCGCGGAGACCTGGGACCTGCTGAGACTCCCCCTGGAGCGG
Seq A exon
GTGAGCCAGGGACACGGGACCGATGTCAGCACAGCCGCTGCCAGAGCATGGGCAGCGGGGTTAATGAGGCAGAGCCACCGCCACCCACCTCAGCCCCTGTCTGCTGGGAGATAATTGTGCCCTCCTCGGCCTGATGCCCTGCATGGCCCATCTGCCACCTGCTCACCCATGTCCCTCAGCGTCTGGCCAGCTGTGCCCCAGGCGAGGCATGGTCCTCACACATTTCAGGCCCCCATACTCCACCCAGCTGCTATGCCACCACACCCTCGGGAGCCCACAGACAGGGGCACCCACTCCTGCCTGCTCCCTGCCCTCTCGGACTCTGACCCAAAGTGGGCACAGCTGCTGCAGGTGCAGACACTGGCTGGGGTTCAGCAGACCCACACAGACAGATTCGGGGGCTGCCTGGCGTAGGGCCCTGGGCTGGCCCTGTGCCTGTCGGCAGTGGGTGCTGTGTGGCCTGGGCCAGCAGCCTGATCTCTCTGAGCCTCTGGTTCCTCTGGTGTGGCCTGTGTTCAGTTGTGGATGGCCGTCAGGGTTCTGCTGTGGGGACGAGACCCAAGGACGCCCACAGTCACTGTCATTGCTGGTATAAGCCGGCTGACATTTGCGGGGGCCACTGGCCCTCAAACACCCCACCCTGCCTCTCCCGGCCCCAGCCAAGGGCCCACAGCCCCAGTCCTCTCCTCCTCTCTGGGTACTGGGCACCTACGGCGTGCATCCATGAAATGGAGGCGGCCTGGCCTTCCCTTCAGGGTCCTGGGATGGGGACATTGGTTCACAATTGCCCAGGCCACGCACAGCCTTACCCCTCCCCAG
Seq C2 exon
GAGCAGAATGGAGACAGCCACCATTCAGGGGACTGGCGGGGGCCCAGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTACCAGGAAGGCCCGGACGCTGAGAGGAGGCCCCGGGAGGGCAGCCACTCCCCGCTGGACAGCGCCGACGTCCGGGTGCACGTGCCACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360-GPSM1:NM_001145638:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAAGAGGACGCAGAG
R:
GGCCTCCTCTCAGCGTCC
Band lengths:
182-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)