GgaINT0124002 @ galGal3
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8627115-8629697:-
Coord C1 exon
chr17:8629627-8629697
Coord A exon
chr17:8627295-8629626
Coord C2 exon
chr17:8627115-8627294
Length
2332 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTATTTCTTGCTTTCCCAAGGAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
GAGCCAGGCCCAAGAGAGTCCAAAGAAACAGCATGGACAGCTTAGACCTCCTCAAGTTCCCTTCTGAAAAG
Seq A exon
GTAAGCAAAGCAGCCTGCCTGGCCTCGGGGACTGAATGTGGGTAGCAATCCATGGCTGCTGGCTGAGGGAAGGACACAATTAGTGTCATTGGAGTCAATGGAATTAACCAAAGAGGGTTTCTAGAGAGCTTGGAGGAGAGGCACTTAACAACTGAAAGCTGAAAAAGGCTATTCTGAACTTTTGTTTTTGGAAAAAAGTCCTCTATCAGAGAGGATGAGGGGTGCAGTTTAGCCCCCTTAGTGGCTCGTGGCCCATCTCAGCATGTTGTTAACCCAGCAGAGTGCTTTGCTCAGGGCAGGGAGGAAGGAGAGGTCAGAAGTGGGAGCTGTGCCTTGCAGGAGGCAGAGGATTTTGTTTCAAGGGGCTCCGAGGACTCCTCCTGCTCCAATGCACTGCTGGAAATGTCAGATCTGAGCAGAGCAGTGCTCTCCCCCTCTCTCCAGGGTGAAGGCTGCTTCTACTGACAGCTGCAGGCACTGAGCCTTCCCACCTATGGGGCTCATTTACATCCCTCAGCAAATCCTGCTCGGAGTCGCTGGGTCTGCCCGGGGCAGCTGTTGGTTTGCTGTAGGGCTCCATCGAGCTCACCGTGGGGGAGGGTGCTGGGTGGGCACTGTGCTCAGCCTTTGGGCTGGACGGATCATCTGGGCATCACGGGGACAGCAGTGCCAGAGGGATGCTCGGTTATGTGTCCCAACCCAGTGGCTGGTTTTGCTGATGTGTGGTTTGCTGCTAACACTGTAACAGCTGAGCCTCCTTCAAGGTGGAGGGGGGGATGGGCTTCAGGAGTCCTCGCGGGAGCAAATGGGATCTGTGGGTTGGGGCACAGGACCCCGGAGCCCAATGGGCAGTGGCAGTGCTGCTGTGTGCCCTGCTATCACCAGCCCTGCTCTTTGTTTTGATCTTTGCTTTCGGCTCCCAGCCATCAGTCCTTGTTTATTCCTCTTTCCAGCAGACTAGAAATCTCTTTATCACACGCTGGCTTTCACCCCGAAGGTGCTTACGTGCTGTAATTGAGTCATCTATCCTTTTGGCGTGAAGGAAGCGGTTTGAAGCCTCTATCCATGGCAGCAAAGCAGCTTCTGTGCTGCCACTTCAGTGCCTGCTTTTCAAGTTGTGGACACCAGCCAGGCTGCAGTCAGCTCTATTGATAACATCTAAAGAATCAAAACTCTCCTCACTCATTCTCACTATTCCTGTTCCTACTGTAAGGAGTGGGAAAACTCCTCCTGGCTGCAGCACCCCGTGCCTGCCCATTGATGTGCTGGGACTTCAGGTCCCTTGGGGAGCTCTGCCTTTCTGGTGTCCATGTCCTGACATGTCATCTCGTGGGTCCTTGGGTCACCTCCTGAGCTGTGTGTTCCAGCTCCTTCCAGCTGTGTGTAGTGAGGAGTGAGGGCAGCCTGAGAGTCTCCTTGGTGCTCCATCGGTGATAACAAGGTGGTTTGCAGTGTGGAAACACCAAAGCACCAAGCAGGTTTAGGTGCCTTTTATAAGAGCCTTTGGAGCTGAGTGCTAAATGCTCCTGTTGGTGTGACTGTATCAGGACCACATCTGCACGACAGCAGTGATGAGGTTGTTGTGATAGCAGGGCAGCCCATAACACGAGGCTTTGACTCAGAAGGGATGGAGCTGCACGCCTTGGAGGAGGGCTGTGAGGATGGGGAAGCCAGCAAGCGGCAGCCGGGAAGCCAAGTGGGGAGCAGCAGTGAGAGGGGATGAGATCCAGGATGCAAGATGCCATGTGTCACCTCCACTCCCCCGTGTGCTACACAGAGGTGATGATCCTGTGTTTTGTGTGGCTATGGGAGCACTGTGCACAGGCATTGAGGAGAGCAGAGGAGGACAGCAGCGATGGAGCAGGGGACTGCTTGCAGCCACCTGCTGCACTTGTCATGTCACCCTGCAGTCCCCATGCACTGCTGTAACACAGGGCTCGGTGAAGGGGCCGAATGGGGCTCCGGCCATTCATGCTGAGCTGCTGGGGTAGGGCTGACCCTCCTGGTGGAAGCACCTTTCAGCCATCGCTTTCTGTGTCTGTAAATAAGGCACCCGTGCCCTTACCCCCATCCCTGCTTTTTGGTTCTTTTTAAGGGGATGCTGCTTCTCTCTCACCTCTCCCTGTGGAGGAGTTGACTACTGTGTGTTGTTTGAGCGATGCTTCCCCTCTGCTCATTAAAATCATTGTCTGTGACGATACACAAAATATATCAGCTCAGTCTGAATGCTGCGTTAACCCCTCGCTTCCGTGCGTCTCCTGCGCTCTGAATCTCAGGGCAGCAGGTCTCGAGACAAGCCATTTGTACAATGCCTATTTCTTGCTTTCCCAAG
Seq C2 exon
GACCAGAATGGGGACAGCCACCACGTGGGAGACCTGAAGATCTTGGGAAAAGAGTTCTTGTCTTTACCTGCGAGGTCGAAGAAATACAGGGAGCACCACCTGGGTTTGGAGAGGAGGCCCCATGGGCAGTGCGCATCGCCCCTGGATAGCAGCCAAGTCCAAGTGCAAGTGCCACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]