RnoINT0067116 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3785953-3786880:+
Coord C1 exon
chr3:3785953-3786023
Coord A exon
chr3:3786024-3786700
Coord C2 exon
chr3:3786701-3786880
Length
677 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
ACCTGCCTTTCCCTCTCCAGGAG
3' ss Score
12.97
Exon sequences
Seq C1 exon
GAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq A exon
GTGAGCTGGGGATGGAAGCTGGCGGCTGGGGACTGAGAACAGATGGCAGGAGAGACACAGTCAGCATGTGGACTCTAGGCTAATGAGCCTAATGTGCAGTATTTGCTGAGCTGTCAGTACTCTTTGGGTCCTGTCCCCTGGGAGATAAATGTCCCTCCCCTCAGCAGCCTGAGGCCCTACAGGAACCTGTTTGTCACCATTCCACCATGAGGTGGTCTTATTAAACTCTGGCATGAACCTTCCCCTGGGTGACATGCCCTGGACTCTGGGGGGAGGGGGTGGAGAACAGCTGTTATTGTTGGAGTAGTTGGTGGGTTTTGGCAAACCCCAAATGGGGTGGGGGGACTCTAGTGTGGGTGTTGTGTGGCCCTAGGCAGTATCTTAGACTCTCTGATCTTCTAGTAGTAAATAGTCTTTGGAACATAACATGGGTTCAAGGTCAGGGGCACCTGTGGTCATCTATGTTGCCTAGCACTGGAAGGCTGACATTTAAGGAAGTTGGCACCGCTCGAATGTCTGGCTGGCTTTGTTTTGTGCCCTCTGGACTTCGTATTCCTTCTGAGACTGAGTGCCTTCTGTGTGTATCCATGAAGTTGGGGCGGCTGGGCCACATGCTGAGAGGGGACTTTGGTTTTAAATTACCATAGCCCATGTCCAACCTGCCTTTCCCTCTCCAG
Seq C2 exon
GAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGACCCAAAAGGACACA
R:
CGAGGCACCTGTACCCTTACA
Band lengths:
246-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]