DreINT0074551 @ danRer10
Intron Retention
Gene
ENSDARG00000054874 | gpsm1b
Description
G-protein signaling modulator 1b [Source:ZFIN;Acc:ZDB-GENE-110203-5]
Coordinates
chr5:70967888-70968190:-
Coord C1 exon
chr5:70968120-70968190
Coord A exon
chr5:70967984-70968119
Coord C2 exon
chr5:70967888-70967983
Length
136 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACA
5' ss Score
1.86
3' ss Seq
GTGTGTGTGTGTTCCTGCAGAAT
3' ss Score
11.81
Exon sequences
Seq C1 exon
GAGCCAGACCCAAACTCAGCAAGAAGAGCAGCATGGAGAGTGTGGAGCTGTGGAAGTTCAGCGCTGAGAAG
Seq A exon
GTCACATGATCAGACTCTGATTGGCTGCAGCTTTAGACACTTTTGAACTAAAGGAAAACTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGCAG
Seq C2 exon
AATGGGGATGCAGCAGATGTGTGTGTGTCGCGCAGCAGCAGGAGTCTTCAGTCAGCAGTGGACACTGAGGACATCACTGTCAGCGTCACCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054874:ENSDART00000011955:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGACCCAAACTCAGC
R:
GGGTGACGCTGACAGTGATG
Band lengths:
162-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]