HsaINT1014791 @ hg38
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136348697-136349763:+
Coord C1 exon
chr9:136348697-136348767
Coord A exon
chr9:136348768-136349586
Coord C2 exon
chr9:136349587-136349763
Length
819 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
ACAGCCTTACCCCTCCCCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGCGCGGAGACCTGGGACCTGCTGAGACTCCCCCTGGAGCGG
Seq A exon
GTGAGCCAGGGACACGGGACCGATGTCAGCACAGCCGCTGCCAGAGCATGGGCAGCGGGGTTAATGAGGCAGAGCCACCGCCACCCACCTCAGCCCCTGTCTGCTGGGAGATAAATGTGCCCTCCTCGGCCTGATGCCCTGCATGGCCCATCTGCCACCTGCTCACCCATGTCCCTCAGCGTCTGGCCAGCTGTGCCCCAGGCGAGGCATGGTCCTCACACATTTCAGGCCCCCATACTCCACCCAGCTGCTATGCCACCACACCCTCGGGAGCCCACAGACAGGGGCACCCACTCCTGCCTGCTCCCTGCCCTCTCGGACTCTGACCCAAAGTGGGCACAGCTGCTGCAGGTGCAGACACTGGCTGGGGTTCAGCAGACCCACACAGACAGATTCGGGGGCTGCCTGGCGTAGGGCCCTGGGCTGGCCCTGTGCCTGTCGGCAGTGGGTGCTGTGTGGCCTGGGCCAGCAGCCTGATCTCTCTGAGCCTCTGGTTCCTCTGGTGTGGCCTGTGTTCAGTTGTGGATGGCCGTCAGGGTTCTGCTGTGGGGACGAGACCCAAGGACGCCCACAGTCACTGTCATTGCTGGTATAAGCCGGCTGACATTTGCGGGGGCCACTGGCCCTCAAACACCCCACCCTGCCTCTCCCGGCCCCAGCCAAGGGCCCACAGCCCCAGTCCTCTCCTCCTCTCTGGGTACTGGGCACCTACGGCGTGCATCCATGAAATGGAGGCGGCCTGGCCTTCCCTTCAGGGTCCTGGGATGGGGACATTGGTTCACAATTGCCCAGGCCACGCACAGCCTTACCCCTCCCCAG
Seq C2 exon
GAGCAGAATGGAGACAGCCACCATTCAGGGGACTGGCGGGGGCCCAGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTACCAGGAAGGCCCGGACGCTGAGAGGAGGCCCCGGGAGGGCAGCCACTCCCCGCTGGACAGCGCCGACGTCCGGGTGCACGTGCCACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360:ENST00000440944:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAAGAGGACGCAGAG
R:
GGCCTCCTCTCAGCGTCC
Band lengths:
182-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains