HsaINT0073583 @ hg38
Intron Retention
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr12:54459089-54460471:-
Coord C1 exon
chr12:54460377-54460471
Coord A exon
chr12:54459126-54460376
Coord C2 exon
chr12:54459089-54459125
Length
1251 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGAAATATTTCTACTTGTAGATG
3' ss Score
7.46
Exon sequences
Seq C1 exon
CCCTGCGAGCAACATAGTTACAGAACATAAGAATAACCTGGCTTCAGGCATGCGAGTTCCCAAATCTCTGCCGTATGTTCTGCCATGGAAAAACA
Seq A exon
GTAAGTGAAATAGAGACAAAATAGTTTTACTCTTTTCATTGTGCTAAATACAGTTGATCTTGATTATTCAGATGTGTTCAGTCTGAACACCTTGCATTTCCATGACCCTTAAAGTGAGTGCCTCCTTAAATGTTATGCCCTAAGCACCTTACTCAGTTCACCCTACTGACCGTGGTTAGGAGCAAGAAATTATGAACAGGAAAGTATAAGATCACAGAAGCCAAAAGAATATTTTCAAAATGGGGTGACCACTGACGTCAAATACCATGAGAAAATTTGGGAGCCAATAAAAAGGTTAATGATTTGGGCTAGGAGGAAGTGATCCCTGATTTCTTTCAAGGCATAATATCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGGCATAATATCAGTAGGGAATTGGGATCAGAAATTGGATTGTGAGGGCCTAAAAGGAAATGAGTAGAGAGAAAATGAAAGTCATAAGTCATAAGAACCAGCATAAAGAATGGTATTCAGATGTCCTCCCCAGACTTTAGAGGTCATGCTGGGTAAACAAGTACTAAATTTGTATCATATTACCGTCATAATGAAATTTCCACATAGAGAACACCCAAGATACTGTCATTTTTACTTAATACAAACTTTCTTTTCCAATGTTGCCCCTAGATTCAGATTCTCTTGATTTCAGTCTGTGCTACTGTTTGAGCTAATTTTTAGGTGGCTAGAGGATTCACTTTAAAACGTTTCTCCCTGGATACTTGCATTTCCCAAAAAATGAAGTCACCAAATTATATGTCAAAAGGCTTGGTAGGTAAAGGTCTATTTTCTTTTCCCATGCTCTTGAATGAAATCTGATTACTAATATTAAATTCTTCTACTTTTATATTATAATTCAGTATACACAGGAATAAGTCATTTGTGTTTAGTAAGAATAGGGGATGGAGTGAATTTCAATTGACATGGTGTATTTATTTTGAAATATTTCTACTTGTAG
Seq C2 exon
ATGGAAATGCACAGTAACTGAATACCTATCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627:ENST00000305879:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development