RnoINT0068578 @ rn6
Intron Retention
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145032282-145034561:-
Coord C1 exon
chr7:145034467-145034561
Coord A exon
chr7:145032318-145034466
Coord C2 exon
chr7:145032282-145032317
Length
2149 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGAAATGTTTATTCTTATAGATG
3' ss Score
7.18
Exon sequences
Seq C1 exon
TCCTGCAAACAACATAGTTATGGAACATAAGAGTAACCTTGCTTCAGGCATGCGAGTTCCCAAGTCTCTGCCCTATGTTCTACCATGGAAAAACA
Seq A exon
GTAAGTAAAACAGAGGTCAAAGTGTTCTTATACTTTTCATAGTGACAAAAGCAGTTGGCTTGATTATTTAGGTCTACTAAGCCTGATGCAGAAAATAAGTGTGACTCTACATGTTGTGTTCAAAGCACCTCACTTACCTCATGCTACTTCTAGGCCTGGTTACAAACAGGAAATTAAGAATAACTTGCAACTGCTGCCCTTCTAGAGAATCTGGGTTTGGTTTCCAGCATCCATGTCAAGTGACTCACAACCTCCCATAAACTCTGTTTACAAGTAATCCAACTTCTCTGGCACCTGTTCTCATATATACATACCTCCAAAGTAACACACGCATGCATATAAATAACAATGAGAAGAGTATTTTAAAAGATAAAGTGCAAGAGCACAAAACCCAGAAAGGTGTTTTCCTGCAGTGCAGTAATCGCTAATGTCGGTGCACTAAGTAGATGTAGAGACCATTAGAGGAGTTGGTGCACCAAGTAGATGTAGAGACCATTAGAGGAACTTTTAATTTTGGTTAAGAAAAAATCATCTCTTATTGTCAAGGCATTAATTTAAAAGGTAAGATCAGGAATAAAAATGCTATTTCAGTAACCTAAAAGACAGTGGATAGGGAAGAAGGAAAGTGCTAAGAAGCAGCAGAGGAAATGGAGTTCAGGTATCGTCCCTAAACATCTAAGGCTATACCCAGTAAACAGGTATGAAATTCACACCATTCTACCCTGATTTTTAAAAAAAAAAAAAATGCACATTTTGGGGCCGGAGAAAAGGCTCGGTTAAGAGTAGTTGCTGTGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAGAGTAGTTGCTGTGGGCTGGAGAGATAGCTTGGTGTTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCATTGGTGACTCATAACCATTTGTAATGGGATCCAATGCCCTTCTGAAATGTCTGAAAAGAGTAGAGTATACTCACATACATACAGAAAGGAAGGGAGGGAGGGAATGAGGGAGGGAGGGAGGGAAAAAATCGCTACATTCAGAAGACCCAGGGTAGGGCCCAGGAGATGGTTCATCAGGTACAAGCATTTACCATGCAAAGCTGACAATCTGCTTTTGATCCTTGAACACATGGTAGAAGGAGGGGGAAAGCTCCTCCTACATCATACACATATGTATACAACATATGTACACATAACAGTTGTTTAAAAGATTTTTAAAAAGAACAAAATACCTAAGATCTTACATTCTTTATTTAAGCCAGACTTTCTGGTATTATTCCCAAATCAAAATTCACTTGAATTCCCTTGATTTCAGTCTTTGTTACTGTTTAGGTTTTGAATGAATAGAAAGGATTCCCTTTAAAGAAGCTAGAGAGATGGATCAGCAGTTAGGAGCACCTGCTGCTCTGGCAAGGGTGTTTGGGTTCCCAGCACCTATATCAAGCAGCTCACACTTGCCCATAATTCCAGTTCCAGGAGACCAAGTGCTCTGACTTCCATGGGCAGTGCATATACACAAAAAACATCTTTAAAGAAATAATAAAACATTTATTTAAATATTTGCATTTCCCAAAAGTGAGATCACTAAATAATTTATCAAAAGGCTTGATAAGCCAGCCACAGTAGCATATACTTGTAATTCCCAGCACTTGAGAGGTAGAGACTAAAGAATCAGGATTTTAGCCTGTGAGACTGTGACTGAGAAAAAGAAAAAGTAGGTAGAAGACTGTTTTCTTTTCCGTGATTCTCACTGGAATCCCATCACTAGTTTTGAATTCTGCTTTAAGATTACTACCCCATATATTCTAGAAATGAGTAATTTGTATTTATGCCAGGCAGTGGTGGCATAGACTTCTAGCACTTGAGAGGCAGAGGCAGGTGCGTCTCTGAGTTAGAAGCGAGCCTGGGCTACAGAGTGAGTTCCAGAACAGCCAGGGCCACACAGAGAAACACTGGCTTGGAGACAAAAGAAACAAAGGTAATTTGTGTTTAGTAAGCACTGAGGGTAGAATGAATTTCAGTCAACATGATATATTTATTTTGAAATGTTTATTCTTATAG
Seq C2 exon
ATGGAAATGCACAGTAACTGTGAACATCTTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831:ENSRNOT00000055275:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]