MmuINT0075115 @ mm9
Intron Retention
Gene
ENSMUSG00000022487 | Gtsf1
Description
gametocyte specific factor 1 [Source:MGI Symbol;Acc:MGI:1921424]
Coordinates
chr15:103235240-103240149:-
Coord C1 exon
chr15:103240055-103240149
Coord A exon
chr15:103235274-103240054
Coord C2 exon
chr15:103235240-103235273
Length
4781 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGAAATGTTTTTTCTTGTAGATG
3' ss Score
9.68
Exon sequences
Seq C1 exon
TCCTGCAAATAACATAGTTATGGAACATAAGAGTAACCTTGCTTCAGGCATGCGAGTTCCCAAGTCTCTGCCCTATGTTTTGCCATGGAAAAACA
Seq A exon
GTAAGTAAAATAGAGGTAAAAGTGTTCTTGCACTTTTCATTGTAACAAAAACAGTTGGTTTGATTATTTTGGTATGTTCAGCCTGATGCTGAAAGTAGTGTGACTCTAAATTGTGTTGAAAGCACCTCACTTACCTCATGGTACTCCTAGGCCTGATTATAAACAAGAAATTAAGAATATTTTGCAGCCGGGCGTGGTGGTGCACATCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTCAAAGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAACAAAAAAGAATATCTTGCAACTACTGCTCTTCTAGAGAATCTAGCTTTGGTTTCCAGCATCTATGACAAGTGACTCTCAACTTCCTGTAAACTCCCTATTACAAATAATCCAACTTCTCTGGCACCGGTTCTCATATGTACATACCTCCACAGTAACACACATGCTATAAATAATTAAAAATAATATGAATATTTTTAAAAGAGAACGTGCAAGAGCATAAAACCCAAAAGGGTGTGGTTTCCTGAAGTGGGAATGTCAGTGTACTAATGTACTGAGTACACTAATGTCATCCACTGATGTCAGTGTACTGAGTAGATGTACAGACCGTTAGAGTAGCTATTAATTTTGGCTAAGAAAAAGTCATTGTCAAGGCATTAATTTAACAAAAAAATAGTATTTCGGTAACCTAAAAGACAATGGGTAGGGAAGAAGAAAAGTGCTAAGAAGCAGCATAGAGAGTAGAGTTCAGGTGTCTTCCCTAAACATCTGAGCCCATGCTGGGTAAAAAGGCATGAATCACCACCAATCTGCCTTGATTTTTTAAAAAAATCCACATTTGGGGGCTGGAGAAATGGCTCAGTTAAGAGTAGTCACTGCTCTTGCAGAGAACCCAAGTTTGGTTCCCAGCACCCGTATACCAGCTCACAGTTACTTACAACTCCAGTTCCAGGGGCCAGACAACAACTTCTGGCCTCCACAGACACCAGACACACATGTGGTACCATGTGTGTACACAGACTGTCTTAGTCAGGGTTTCTATTCCTGGACAAAACATCAGGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACATTTCCACATTGCTGTTCATCACTGAAAGAAGTCAGAACTGGAACTCAGGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGATTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCGTGGAGGCATTTCCTCAACTGAAGCTCCTTTTTCTGTGATAAATCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAATTGACCCCTTGTCAACTTGACACACAAACACATCACTAGTAAGCCTCAACCCTTAATTTCTTATTCATCCCCAAGATCTAAACAACTTTAAAACTCCCACAGTCTTTACATATTAAAAGTCAATCCCTTTAAAATGTCTAATATTTTTTAAAATCCAAAGTCTTTTTACAATTAAAAGTCTCTTAACTGTGGAATCCACTAAAATATTTTCTTCCTTCAAGAGGGAAAAATATCAGAGCACAGTTATAATCAAAAGCAAAAATTAAACTCCAACTGTACAATGTCTGGGATCCAACTCACGATCTTCTGGGCTCCTCCAAGGGCTTAGGTCACTTCTCCAGCCCTGTCCTTTGTAGCACATGGCTTGTCTTCTAGGCTCCAGCTGCCTGTACTCCACTGCTGCTGCTATTCTTGGTGGTCTTCTCATGGTACTGGCATCTCTGAAATGCTGCTGTCTTCCACTGTAACTTGACTTCAACAACAGCCTCTCATAGGCTCTATTCATGGTCCCAAGCCTCAAATCCTTTGCATGATCCCTTCAGTCCTGGGCCATCATTTGCAACTGAGGCCGCACCTTCACCAATGGCCTTCCACGGCCTCTCACAGTGCTGAGCCTCAGCTGCTCTGCGTGACCCCTTCATGCCTTCAAAACCAGTACCACCTGGGTGACTCTTACACATTACCAAGTCCAGCCACAGCACAAGGTAACAACTTTGGCTATCTCTGGAACACAGCCTCTATGCTCTCAGAAAACACATCCAAGAAGACGTCACCTCAGTGATGCTGGTCTCTTCTTAATCACCGCTAATTTCTTAGCTCCAGCTAACCAGCATCAATAGTCCCAGTAATGCCAAGGTTTTGCTTTAGTAGTTCTGGTATCTTGTTAATCATAGCTGATTCTTCAGCCCCAACTAGCCAGAACCACAGAATCTTCACAATCCAAAATAAGTATGGCCCTGAAAAGAGTCTTTAATGTTCCCTCTGAAATTTCACAAGCCAGGCCTCCAACGTCTGCACTGTTTTCAACATTTTCTTCCAACCTCCTACACAACGTCTGACAGAGCACTTAACACCGAATGGATCTTCTAGCCCAAAGTTTCAAAGTCCTTCCACAGTCCTCTCCAAAACATGGTCAGGTTGTCACAGGAATACCCCACTATGCTGGTACCAATTTGTCTTAGTCAGGGTTTCTATTCCTGGACAAAACATCAGGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACATTTCCACATTGCTGTTCATCACTGAAAGAAGTCAGAACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGATTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTAAGAAAATGCCTTACAGTTGGATCTCGTGGAGGCATTTCCTCAACTGAAGCTCCTTTTTCTGTGATAACTCCAGCAGTGTCAAGTTGACACAAAACTAGCCAGTACACAGACACACTTTTTTTTTTGTAATTTAAAAAAAGGGAAGGGGTAGGCTGAAGACATGCTTCAACGGTTAAGAACACTAACTACCCTTTTAGAGGTCCTGAGTTCAATTCCGAGCAAGTGTTGGTGGCTCACAACCATCTGTAATGGGACCCAGTGCTATTCTGATGTGTCTAAAGAGAGGAGAATGTACTCACATACATTTAAAAAGAAAGAAAGGGCCAGGCGTTGGTGACGCACGCCTTTAATCCTACACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAAGAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAAAGAAATTGCTACATTCAGAATACCCAGGTAGGGGCCAGGAGATGGTTCATCAGGTATAAGCACTTACCGTGCAAATCTGACAACCTGCTTTTGATCCTTGAACACATAGTAGAAGGAGAGGAAAAGCTCTTCCTACATCATACACATATGTATACCATATATATATTCATACACACACACACACACATATATATATATACATACACATACACACATAACAATTGTTTAAAAGACTTTTGAAAAGAACAAAATACCTAAGATTGTATGATCTTTATTTCATCCAGACTGTCTGGTATTATTCCCAAATCCAAATTTACTTGAGTCCCTTGATTTCAGACTTTGTTACTATTTAAATTTTGAGTGAGTAGAATGGATGCCCTTTAAAGAAGCTAGAGAGATGGCTCAGCAATTAAGAGCACCTGCTGCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGGGCACCCGACTGCTCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGGTGCCCTCTTCTGGTGTATCTGAAGACAACTACAGTGTACTTACATATAGTAAATAAATAAATCTTTAAAAAAAAAAAAAGAGCACCTGCTGCTCTGGCAAAGGATGTGTTTTGGTTCCTAGCACCTATATCAAGCAGCTCACACTTGCCTGTAATTCCACTTCCAGGAGACCTAATGCCCTGACTTCCATGGGCACCTGCATACACGTGGTGCACATAAACTCACAGAGGTGCATATGCATACACAGGCAAAAAAATCTTTAAATACTAAAACACATTTACTTAAATATTTGCATTTCCCAAAAGTGAGATCATTAATATATCAAAAGGCTTGATACAGTCAGCTACAGTAGCATATACTTGTAATTCCCAGCACTTGAGAGGTAGACTGGAGAATCAAGATTTCAGCCTGTAAGACTGTGTCTCAGAAAAAGAAAAAGAAAAAAATAGGTAAAAGACTATTTTCTTTTTCCATGATTCTCAGTGGAATCCCATTGCTAGTTTTGAATTCTGATTTAAGATTACTACCCTATATATTCTAAAAAAAGAGTAATTTGTATTTATGCCAGGCAGTGGTGGCATAAACTTCTAGCATGTGGGAGGCAGAGGCAGGTGGATCTCATGAGTTAGAAGCCAGCCTGGTCTACGGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGGCTTGGGGGGGGGGAAAAAAGTAATTTGTGTTTTTGTGTCTAGTAAGCACTGAGGGTAGACTGAATTTCAGTCGACATGATTTATCTATTTTGAAATGTTTTTTCTTGTAG
Seq C2 exon
ATGGAAATGCACAGTAACTGAACATCTTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022487-Gtsf1:NM_028797:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: