HsaINT0074183 @ hg38
Intron Retention
Gene
ENSG00000140511 | HAPLN3
Description
hyaluronan and proteoglycan link protein 3 [Source:HGNC Symbol;Acc:HGNC:21446]
Coordinates
chr15:88887175-88895626:-
Coord C1 exon
chr15:88895459-88895626
Coord A exon
chr15:88887346-88895458
Coord C2 exon
chr15:88887175-88887345
Length
8113 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TGTTTTCCTCCCCTTCCCAGTTT
3' ss Score
9.73
Exon sequences
Seq C1 exon
AAAGGTGCGCGTGTTCCTTTAAGGGGCTGGTCTGGCGGGAGCGCGGGGGTTTTTCTGCTGCCGCTTCCTTTCTGCCCTTTTAATTTCCCCGAAATCAGACTGCTGCCTTGGACCGGGACAGCTCGCGGCCCCCGAGAGCTCTAGCCGTCGAGGAGCTGCCTGGGGACG
Seq A exon
GTACGTGGCTTAGGGGTCGCTGGGCTTCTGGGGCTGTGTGCGGGCCGGGTTCCTCCCTTACCGCTTTGGGTGCCCTGCGGGTCCCCACACCTCCCGGGCAGGGTCCGGGGAAGGGGCAGGAGGCGTGGGCCGGGCACTGCGGAGGCCCGGGCTGAGATGGGCTGTGATCGCGGGCGAGGGGCGCCCGGGGCACAAGTGGGGAGGGAGCGGCGCGGGGATGCGGGCGCCGGACCCTCGTGCCCACCGTGAGGGAGCAGAGCCCGAGCGGACCCCGTGGCCTCCGAGACCACCGTCCGCCTCCAGCCCCCTTCCTGCCAGGGTCCGCTTGGCTCTCTCCCCTGTCGTCTGTCCAGGGTCGGCTGCCTCCAGTGCCGTCCGCGGCGCCCCAGGCCCTGCCCCTGGGTATCTGTTGGATGCTCCGGGGGCCCCGGGAGTCCTGGGAGGGGCTGAGGGCAACCTGCGAGGCGGCTGGCGGACCTGCGCCTCTGGACCGCAGCTGGCCGGCTCTGGGCGCCTGGGGCAAAGGCAACTGATGCCTATGGGTTCCAGACCTCGCTCACCGGGGTTCTTGCCCCAGGGACAGCGAGGCCAGAAGGGTAGGGAGGGTGGAGGGCAGAGCCCTGGGTGGGAGATGGCGACCCTCAGGGAGAAACGTAGGCTTGTGCGCAGCCAGTATGGAAACAGCACGGCACTTGGACCCAGTCCTGCCACCAGCTCGTTGGCAGCCACAGGCCACAGGCAGCCTGTAAACCTGTTGGGACCTTGGTGTCCAGCGCTGACCCGCGGGAGTGCCTGTGCTCCCTGGAGTAGGGGGCAGCGATTGAGAGGGGCCCTGGCTTCTCTCCCTCGACGCCGCCCGGGCCAGCGGATTGGGAAACACCTCCGGTTTTCATTCTCCTGGGGGCTGCAGGTTTCAAAGGCGGAGATCAAGCCTTGTGCAAACAGGGACAGGGATGTCAAATTTCTCGCTGGGAGCAGCGCTCGTGCAGACCTCGCGGGCGATGCTGCCTCCTGCTGGTACCTGGGGGACTTGTACTCACGGAAGGCCCAGTGCGGACATGCACCTGGCAGGGAGGTGGCACCTACCCTCCCTCCAAGCCCAGGCTTATTGTTCTTGGGTGGAGGGGTCCCTAGGCTGGGGCGCCTGGGAAAAGCAAAGGGCTGGTCATCAGGAAACCTGAACTTTCTCTAAGTTCGAGATATTTGACAAAGATAACGCCTTGGGTAGTTCACTGACCTCCACTCTCTTGGCCTCAGTTTCCTCAACTGTGAAGAGGAGGCAGTGGTGACCACTTTGTCTCGTAGGCAGTGAGAGAGGAGAAAGAGCCACTGAGATGGTGTAAGACTTCACTGTGTGAACTGCTCACCAGAGTAGTAACAGGTCATATTTTCCCAGTGCTTGCTCCTTATCAAGCATCAAGCAGTATTTTCAGTGCTCTGCAGCTATTCTCTCCCTTAATCTTCACGAGAGTGTTTTCTGTTTGGTATTGTCGTGACCGCCCCCCCCACCCCAACTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTTCTTGCCCAGACTGGAGTGCAATGGCTCAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAGCTGGGACTACAAGCGCTCATCACCACACTCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTAGTCTTGAACTCTTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCAGGGATAACAGGCATGAGGCACTGTGCCTGGCTTGTGACCCCCATTTTAAAGATGAAGAAACTGAGGCTCAGAGAGGTGCAGCGACTTGTCCAATGACAGAGGGTTAGTAAGTGGGTGGAGCCAGAACTGAATGCAGGCAGCCAATCTGCTTCTAGAGCCTGAAATCTTTGCCATGTTCATTTGTTGAGCACCTGCTGCATGCCAGGGACCAGACATCATACATCTTCTATAATTGTCACCACAGCCCATTTTTTTTTTTTGAGCTGGAGTCTTGCTCTGTCGGCCAGTCTGGAGTGCAGTGGTGTGGTCTTGGCTCACTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCCTGCCTTAGCCACCCCAGTAGCTGGGATTACAGGCATCTGCCACCACACCCAGCTAAATTTTGTATTTTCATTAGAGATGGGGGTTTCACTGTGTTGGCCAGGCCAGTCTCGAACTCCTGACCTCAGGTGATCCACCCCCTCAGCTTCCCCAAATGCTGTAGGATTACAGGTGTGAGCCACTGCACCCGGCCTTAAGTTCCTTTTTTTTACAGATGAGGAAATGGAGGCACAGAGAGGTGAACTTGCCCGAAGTCACTCAGCAGGATGCAGTGTGTCCAGCTCCAATACCGAGCCCAGGTCTGAGTGCCCAGACAGGACTCCAGAAGATTTGGGGAACTATCCACTGCCAAGGTGACTGGGCTGGACTTGGTCTTGGGCCTTCCAGCTGGTGGCACCTCTGTGGTGGTCCTGAGGAGTTGGTGGCTGGATAGCCATGGTAGGGGAGCAGAGGCTACCCATCCCTCCCCTCAGTGGTAGTGGTCAGGGATGGTCAGAGATGGACCTGAGGCAAGGCAGCAACCAAGTGGCAATTGCCACTCCTGACTCCCACACAGGACTCTGTCCTGTGCACTGACCTTAGCATTCAAGGCTGTGCTTGTCCTCAGCCCCCGAGTTCCCCTTTAGTCTTCTCTGGAGAGAGGAAATTTTCTGTTCAGAGAGGTCAAATGACTTTCCCAGGGTCACCCAGCTAGCAGGTGGCAGAGCCAAGACCCAACCTCAATGAGTTTAACTTGAAACCTTGGGCCTGTGTGCTGCTCCTCTCTCAGAGAGGCCTGGAAAATGGCCAGCTTCCTCCTGGCCTTTTGTTCTTGGGCACAGGGCTGATCTTTTCTTATAATTCCTTTTGTTTTTCTTTTCTTTTTTTTTTGAGATGCAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAAAGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACCCACCACCACACCCATCTATTTTTTATATTTTTAGTAGAGACGGGGTTTTACCATGTTGGCCAAGCTGGTCTCAAACTCCTGACCTCAGGTGATCTACCCTCCTTGGCCTCCAAAGTGCTGGGATAACAGGTGTAAGCCACTGTGCCCAGCTAATTCCTTTTGATTTTCTTGGCATCCCCCTCAATGTGAGGTTACATTACTGCTGAGTTAGCATCCAACAAAGAGGTGTTACTGATGTCACTTAGTGGCAGAAACGCCTGCATTTGTTTACCCTTAGGAAGCCCTTTCTCACTAGGGAGCATTTGTGCTAGATGAGCCGCTGTAAGAGGCTGGAAACATTATAAGCAGCAGCTGGGAGCCCCTCTGCTCAAGGAGACTCTAGGTGCCCAGGGACAGCGGGGAGCCCAGGACATCAAGCTCAACATCAAATCTTGGCCCCACTTCCCTCCTGGTTCCAGGTGTGGAGCCTGAAGGAAGGCAGAGGAAACGAACTCTTACAAGGGTTTGCTCTGGGCCACTGGGCTGTGTGTGCCACACAATCACCTCCCTGAATTTGGCATGGTTCCAGGCTTTGGGGCTGGAGTGGGTTCGAATCCTAGCTCTGCCACTTCCTAGCTGGATGACCTTGGGCATATGACTTAGTCTCTCTGTGCCTTGGTTTTTCCATCTGCAAAATGGGAACACTACTAGGCTCACATGTCAGGGTAGTGGTAAGGATTACATGAGAGATACCAGGTGTGGTGGCTCATGCCTGTAATACCAGCACTTTGGGAGGCGGAGGCGGGCAGAACAATTAAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAAACCCCATCTCTACTAGAAATACAAAGAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGATTCATTTGAACCCAGGAGGCAGAGGTTGCTATGAGCCGAGATCTTACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTGGCCTCAAAACAAAAACAAAAATAAAATAAATGAGAGAGTAAGTGCTCAGCTGTTAATACTTTTATACTGATCATAGTAATGCTGTGGTGTGTGTATTTGTTAGGACAAGTGAGGCTAAGCTGTGTTGACAAAGAGATGCAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACTAGCTTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAAATTACAAAAATTAGCCTGGTGTGGTGGCAGGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAAGAATTGCTTGAATCTGGGAGCAGAAGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTTAGTCTCAAAAAAAAAAAGATGCAAAAAAGTGGTGGCTTAAATATGATAGGACTCTGTTTCTCTCTCATAGGACAGTGCAAGTGGAGGAGGTCCAGGGCTGATGGGCAGCTCTGCCATTCAATCTGTGGTTTCCATCTCTGACTCTAAGCTGGATACTGTGGTTTCCAGAAGGTTGGGGGAAGGAATACCAGGGAAAGGCATCTGTAATTGTTTTAACTGCCAGACCTGGATGTGGCATGTTATTTCTGCTTGCTGCCATTGATGAGAACTGAGTCACATAGCTCTCCTAGCTGCGAGGGAGGCTGGAAATGCAGTCTTCAGCTGAACGGTCGTGCACCCATCTAGACCTCTGTTACTTTAGGAGAAAACTAGAATGCATTGGCGAGAAATATACCAGGGTGAGTTTTATGATCTCCATTTCGCAACCGAGGAAACTTGCCCAGAATCTCGCAGTGAATAAATAGTAGAGGTGGGATTTGAACTCTGATCTTCCAGTTCCCAAACTCTGTACCAGGTTGCCCCATTGTGCTTAGGCCTCCCAGTTCTCCATCACCAAGGGGGCTTACAGGAATCAACAGGGGAATGAATTCCTCTTGGACAAGAAGTGGGGTTTCAGAGTTGGTAGTGTCCTGGCTGCAGTGCACAGCACAGATGGCAGGTCTGGGCCTTGGGATTTCTGTGGTGTCTAAGGGAATGGTGGATTTGGCCTCTCAACTTTCTTTACATCCATTCTCTCCAGCAAGAGCTCCTAACTGTTCTGGAAACAAGAATGTTTCCTCCACAATCCCATCACTCTAACAAGCCAATGCTGTGTGTGTCTGCCTGCCTCCTTTCCTCCCTCCTTCCCTTTCCTTCCTTCCTTCCTTTCCTTCCTTCCTCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCTTTCCTTCCTTCCTTTCTCCCTTCTGTCCTCCCTCCCTTCCTCTTTAAGTGTTTCCTCATCTTCTGGGTCCTGTACACAGGCATTCACAAGACCACATGGTTGCAATCATAGCAGAGGCAATTGTATGTTCTGCTTTGTCTATTTTAACTTACACCCTAAGCATTCTTCCACGTTGCTACATGATAATCATAGTTATGTTTGCAGCTGCCTGCTGTCATTCTGGTCTTGCTGCCCCCAGGTCTACCTTCCACTCAGCCCCTGCAGGGAAGTGTCTTAAGATGTGAGTCTGATCCTGTGACTTCTCTGCTTAAAGCCATCACTGGCCTCCAGGACAAAGGATAGACTTCTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTCGAGGCGAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCGTCTCTACAAAAAATACAAAAATTAATGGGGCATGTTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGAACCCAGGAGACGGAGGTTGCAGTGAGCTCAGATCTTGCCACGGCACTCCAGCTTGGACAACAGAGTGAGATTCTATCTTTAAAAAAAAACAAAACAGGATATGCTTCTGGGCCTGACACCCAAGGCATCCAGACGCTGGCCCTGGTGACCCCCTTACCTCCTCTCCCCCATGCAGCCAGGGTCTTGGCAGGAAGCAGAATTCAGCCCAGATGATTCCAATAAAGAGACTTTAATGGAGGAATGACTTCTAGAGAGTAGGGTGAGGGGACCCAACAAGGAAGTGGGGGACGCAGAGGCCAGCAGCAGCAGCAGACACTCTATGGCAGAGGCACTGGGGTGGCAAGGGAGCTGGGAAGCAATGCCCCGTCTTCCTCCTCTTCCCTCTCTGCCATCTTCTCTGAGTGCCTCCCATTGGCTCAATCCCACTGGAAGCCAGAAGGCCTGGGGAACTGGGACAACAGGGACCAATACGTGTCAGAGAAGGACAGACGATGGACCTGGTGGGTGTGTGGGGCAAATGGAGGACCTCCTGTATACCCCCAGCACCCCCAGGCTTGGGACTCTTGCTGGCATCTGCACCTTTGTAGTGGCAGTGCCCTACTGGATAAACCTGTCAGTCCTTCTCCACCTGGCAAACTCCTGCATCTTCAGTCTCATTTGGACATTCCCGTTTCTGTACCTCCATCGTGGTACTCAACACACAGCAATCAAGACTGCCTGCCCACGACTCTGCCCCCTCCCTGGACCAAGCTCCTTCAAGGAGTGACCCCATCTTTTAATTGTTGAGAGCACGCAGTAAATGGCAGGTGAGCAGGGCTAGGGTGACATGAGTGAGGCAGTAGCCCTTGGTGTGAGATTTAAGCGGGGGAGGAAGGGAGTTTGCTAGAAATCTTAGTAATCAAGACAAAATATTTGAATACAATATTTAAAAAAAAATCAAATCATCAAACTACAGCCCATGGGTTGGCTACCTCTTTTGAGCGCCCACCCAAACTGGAATAGCTCCCAAGACCTCTAGCATGGTGTTCAAAAATTATTTTTGAGTTGGGCGCAGTGGCTTATGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCTGATCACTAGGTCAGGAGATTGAGATCATCCTGGCTAACGCGGTGAAACCCCGTCTGTACTAAAATTACAAAAAATTAGCTGAGCTTGGTGGCACGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTTCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCAACCTCCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAGGGTTCACAATGCAGGACTCATCTTTACTTAACATACCCTCTATTCACCCTGATATTTTCTATTCTAGTCTAGTTTATTTGGCGTCATTAAAAAGTGCTGCTCATACCTTTCTTTTCTTTTCTTTCTTTTTTCTTTTTTTTGAGATAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACCACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGACATGTGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGCCAGGCTGGCCTCAAACTCCCAACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTCCTGGGATTATAAGCGTGAGCCACCATGCCCAGCCTGCCCATAACCTTTCAAATTCTGGCTTGAAAAACATTGAGCCTGTCATATCATCCTGCTTAATTTTCTCTGCTTTTAGCTGCCTGATACTTCCTTCTTATGATTTGTCTCTTTGCTGATCTCCCGTCTTGCCTTCGGGGTACAGCTCCCTGAAAGCAGGAACCCCATCTAGCTTGTCACTGCTGTCTTCTCAGCTCCGGGAACAGCGTCTGGCACGTAGGCGGCAGGTGTCCCGCAGTGAGCTGTTGAGCAAGCGAGTGAGTGGTGTTGGAGCAGAGGGGATGTGGGCCCTGGAAGCCAGGCTTTTCTAATTGCCTTGTTTTCCTCCCCTTCCCAG
Seq C2 exon
TTTGCCCTGGGGCCCCAGCCTGGCCCGGGTCACCCTGGCATGAGGAGATGGGCCTGTTGCTCCTGGTCCCGTTGCTCCTGCTGCCCGGCTCCTACGGACTGCCCTTCTACAACGGCTTCTACTACTCCAACAGCGCCAACGACCAGAACCTAGGCAACGGTCATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140511:ENST00000359595:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
ENST00000562889fB16877
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development