HsaINT0074183 @ hg19
Intron Retention
Gene
ENSG00000140511 | HAPLN3
Description
hyaluronan and proteoglycan link protein 3 [Source:HGNC Symbol;Acc:21446]
Coordinates
chr15:89430406-89438770:-
Coord C1 exon
chr15:89438690-89438770
Coord A exon
chr15:89430577-89438689
Coord C2 exon
chr15:89430406-89430576
Length
8113 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TGTTTTCCTCCCCTTCCCAGTTT
3' ss Score
9.73
Exon sequences
Seq C1 exon
CCCGAAATCAGACTGCTGCCTTGGACCGGGACAGCTCGCGGCCCCCGAGAGCTCTAGCCGTCGAGGAGCTGCCTGGGGACG
Seq A exon
GTACGTGGCTTAGGGGTCGCTGGGCTTCTGGGGCTGTGTGCGGGCCGGGTTCCTCCCTTACCGCTTTGGGTGCCCTGCGGGTCCCCACACCTCCCGGGCAGGGTCCGGGGAAGGGGCAGGAGGCGTGGGCCGGGCACTGCGGAGGCCCGGGCTGAGATGGGCTGTGATCGCGGGCGAGGGGCGCCCGGGGCACAAGTGGGGAGGGAGCGGCGCGGGGATGCGGGCGCCGGACCCTCGTGCCCACCGTGAGGGAGCAGAGCCCGAGCGGACCCCGTGGCCTCCGAGACCACCGTCCGCCTCCAGCCCCCTTCCTGCCAGGGTCCGCTTGGCTCTCTCCCCTGTCGTCTGTCCAGGGTCGGCTGCCTCCAGTGCCGTCCGCGGCGCCCCAGGCCCTGCCCCTGGGTATCTGTTGGATGCTCCGGGGGCCCCGGGAGTCCTGGGAGGGGCTGAGGGCAACCTGCGAGGCGGCTGGCGGACCTGCGCCTCTGGACCGCAGCTGGCCGGCTCTGGGCGCCTGGGGCAAAGGCAACTGATGCCTATGGGTTCCAGACCTCGCTCACCGGGGTTCTTGCCCCAGGGACAGCGAGGCCAGAAGGGTAGGGAGGGTGGAGGGCAGAGCCCTGGGTGGGAGATGGCGACCCTCAGGGAGAAACGTAGGCTTGTGCGCAGCCAGTATGGAAACAGCACGGCACTTGGACCCAGTCCTGCCACCAGCTCGTTGGCAGCCACAGGCCACAGGCAGCCTGTAAACCTGTTGGGACCTTGGTGTCCAGCGCTGACCCGCGGGAGTGCCTGTGCTCCCTGGAGTAGGGGGCAGCGATTGAGAGGGGCCCTGGCTTCTCTCCCTCGACGCCGCCCGGGCCAGCGGATTGGGAAACACCTCCGGTTTTCATTCTCCTGGGGGCTGCAGGTTTCAAAGGCGGAGATCAAGCCTTGTGCAAACAGGGACAGGGATGTCAAATTTCTCGCTGGGAGCAGCGCTCGTGCAGACCTCGCGGGCGATGCTGCCTCCTGCTGGTACCTGGGGGACTTGTACTCACGGAAGGCCCAGTGCGGACATGCACCTGGCAGGGAGGTGGCACCTACCCTCCCTCCAAGCCCAGGCTTATTGTTCTTGGGTGGAGGGGTCCCTAGGCTGGGGCGCCTGGGAAAAGCAAAGGGCTGGTCATCAGGAAACCTGAACTTTCTCTAAGTTCGAGATATTTGACAAAGATAACGCCTTGGGTAGTTCACTGACCTCCACTCTCTTGGCCTCAGTTTCCTCAACTGTGAAGAGGAGGCAGTGGTGACCACTTTGTCTCGTAGGCAGTGAGAGAGGAGAAAGAGCCACTGAGATGGTGTAAGACTTCACTGTGTGAACTGCTCACCAGAGTAGTAACAGGTCATATTTTCCCAGTGCTTGCTCCTTATCAAGCATCAAGCAGTATTTTCAGTGCTCTGCAGCTATTCTCTCCCTTAATCTTCACGAGAGTGTTTTCTGTTTGGTATTGTCGTGACCGCCCCCCCCACCCCAACTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTTCTTGCCCAGACTGGAGTGCAATGGCTCAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAGCTGGGACTACAAGCGCTCATCACCACACTCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTAGTCTTGAACTCTTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCAGGGATAACAGGCATGAGGCACTGTGCCTGGCTTGTGACCCCCATTTTAAAGATGAAGAAACTGAGGCTCAGAGAGGTGCAGCGACTTGTCCAATGACAGAGGGTTAGTAAGTGGGTGGAGCCAGAACTGAATGCAGGCAGCCAATCTGCTTCTAGAGCCTGAAATCTTTGCCATGTTCATTTGTTGAGCACCTGCTGCATGCCAGGGACCAGACATCATACATCTTCTATAATTGTCACCACAGCCCATTTTTTTTTTTTGAGCTGGAGTCTTGCTCTGTCGGCCAGTCTGGAGTGCAGTGGTGTGGTCTTGGCTCACTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCCTGCCTTAGCCACCCCAGTAGCTGGGATTACAGGCATCTGCCACCACACCCAGCTAAATTTTGTATTTTCATTAGAGATGGGGGTTTCACTGTGTTGGCCAGGCCAGTCTCGAACTCCTGACCTCAGGTGATCCACCCCCTCAGCTTCCCCAAATGCTGTAGGATTACAGGTGTGAGCCACTGCACCCGGCCTTAAGTTCCTTTTTTTTACAGATGAGGAAATGGAGGCACAGAGAGGTGAACTTGCCCGAAGTCACTCAGCAGGATGCAGTGTGTCCAGCTCCAATACCGAGCCCAGGTCTGAGTGCCCAGACAGGACTCCAGAAGATTTGGGGAACTATCCACTGCCAAGGTGACTGGGCTGGACTTGGTCTTGGGCCTTCCAGCTGGTGGCACCTCTGTGGTGGTCCTGAGGAGTTGGTGGCTGGATAGCCATGGTAGGGGAGCAGAGGCTACCCATCCCTCCCCTCAGTGGTAGTGGTCAGGGATGGTCAGAGATGGACCTGAGGCAAGGCAGCAACCAAGTGGCAATTGCCACTCCTGACTCCCACACAGGACTCTGTCCTGTGCACTGACCTTAGCATTCAAGGCTGTGCTTGTCCTCAGCCCCCGAGTTCCCCTTTAGTCTTCTCTGGAGAGAGGAAATTTTCTGTTCAGAGAGGTCAAATGACTTTCCCAGGGTCACCCAGCTAGCAGGTGGCAGAGCCAAGACCCAACCTCAATGAGTTTAACTTGAAACCTTGGGCCTGTGTGCTGCTCCTCTCTCAGAGAGGCCTGGAAAATGGCCAGCTTCCTCCTGGCCTTTTGTTCTTGGGCACAGGGCTGATCTTTTCTTATAATTCCTTTTGTTTTTCTTTTCTTTTTTTTTTGAGATGCAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAAAGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACCCACCACCACACCCATCTATTTTTTATATTTTTAGTAGAGACGGGGTTTTACCATGTTGGCCAAGCTGGTCTCAAACTCCTGACCTCAGGTGATCTACCCTCCTTGGCCTCCAAAGTGCTGGGATAACAGGTGTAAGCCACTGTGCCCAGCTAATTCCTTTTGATTTTCTTGGCATCCCCCTCAATGTGAGGTTACATTACTGCTGAGTTAGCATCCAACAAAGAGGTGTTACTGATGTCACTTAGTGGCAGAAACGCCTGCATTTGTTTACCCTTAGGAAGCCCTTTCTCACTAGGGAGCATTTGTGCTAGATGAGCCGCTGTAAGAGGCTGGAAACATTATAAGCAGCAGCTGGGAGCCCCTCTGCTCAAGGAGACTCTAGGTGCCCAGGGACAGCGGGGAGCCCAGGACATCAAGCTCAACATCAAATCTTGGCCCCACTTCCCTCCTGGTTCCAGGTGTGGAGCCTGAAGGAAGGCAGAGGAAACGAACTCTTACAAGGGTTTGCTCTGGGCCACTGGGCTGTGTGTGCCACACAATCACCTCCCTGAATTTGGCATGGTTCCAGGCTTTGGGGCTGGAGTGGGTTCGAATCCTAGCTCTGCCACTTCCTAGCTGGATGACCTTGGGCATATGACTTAGTCTCTCTGTGCCTTGGTTTTTCCATCTGCAAAATGGGAACACTACTAGGCTCACATGTCAGGGTAGTGGTAAGGATTACATGAGAGATACCAGGTGTGGTGGCTCATGCCTGTAATACCAGCACTTTGGGAGGCGGAGGCGGGCAGAACAATTAAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAAACCCCATCTCTACTAGAAATACAAAGAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGATTCATTTGAACCCAGGAGGCAGAGGTTGCTATGAGCCGAGATCTTACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTGGCCTCAAAACAAAAACAAAAATAAAATAAATGAGAGAGTAAGTGCTCAGCTGTTAATACTTTTATACTGATCATAGTAATGCTGTGGTGTGTGTATTTGTTAGGACAAGTGAGGCTAAGCTGTGTTGACAAAGAGATGCAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACTAGCTTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAAATTACAAAAATTAGCCTGGTGTGGTGGCAGGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAAGAATTGCTTGAATCTGGGAGCAGAAGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTTAGTCTCAAAAAAAAAAAGATGCAAAAAAGTGGTGGCTTAAATATGATAGGACTCTGTTTCTCTCTCATAGGACAGTGCAAGTGGAGGAGGTCCAGGGCTGATGGGCAGCTCTGCCATTCAATCTGTGGTTTCCATCTCTGACTCTAAGCTGGATACTGTGGTTTCCAGAAGGTTGGGGGAAGGAATACCAGGGAAAGGCATCTGTAATTGTTTTAACTGCCAGACCTGGATGTGGCATGTTATTTCTGCTTGCTGCCATTGATGAGAACTGAGTCACATAGCTCTCCTAGCTGCGAGGGAGGCTGGAAATGCAGTCTTCAGCTGAACGGTCGTGCACCCATCTAGACCTCTGTTACTTTAGGAGAAAACTAGAATGCATTGGCGAGAAATATACCAGGGTGAGTTTTATGATCTCCATTTCGCAACCGAGGAAACTTGCCCAGAATCTCGCAGTGAATAAATAGTAGAGGTGGGATTTGAACTCTGATCTTCCAGTTCCCAAACTCTGTACCAGGTTGCCCCATTGTGCTTAGGCCTCCCAGTTCTCCATCACCAAGGGGGCTTACAGGAATCAACAGGGGAATGAATTCCTCTTGGACAAGAAGTGGGGTTTCAGAGTTGGTAGTGTCCTGGCTGCAGTGCACAGCACAGATGGCAGGTCTGGGCCTTGGGATTTCTGTGGTGTCTAAGGGAATGGTGGATTTGGCCTCTCAACTTTCTTTACATCCATTCTCTCCAGCAAGAGCTCCTAACTGTTCTGGAAACAAGAATGTTTCCTCCACAATCCCATCACTCTAACAAGCCAATGCTGTGTGTGTCTGCCTGCCTCCTTTCCTCCCTCCTTCCCTTTCCTTCCTTCCTTCCTTTCCTTCCTTCCTCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCTTTCCTTCCTTCCTTTCTCCCTTCTGTCCTCCCTCCCTTCCTCTTTAAGTGTTTCCTCATCTTCTGGGTCCTGTACACAGGCATTCACAAGACCACATGGTTGCAATCATAGCAGAGGCAATTGTATGTTCTGCTTTGTCTATTTTAACTTACACCCTAAGCATTCTTCCACGTTGCTACATGATAATCATAGTTATGTTTGCAGCTGCCTGCTGTCATTCTGGTCTTGCTGCCCCCAGGTCTACCTTCCACTCAGCCCCTGCAGGGAAGTGTCTTAAGATGTGAGTCTGATCCTGTGACTTCTCTGCTTAAAGCCATCACTGGCCTCCAGGACAAAGGATAGACTTCTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTCGAGGCGAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCGTCTCTACAAAAAATACAAAAATTAATGGGGCATGTTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGAACCCAGGAGACGGAGGTTGCAGTGAGCTCAGATCTTGCCACGGCACTCCAGCTTGGACAACAGAGTGAGATTCTATCTTTAAAAAAAAACAAAACAGGATATGCTTCTGGGCCTGACACCCAAGGCATCCAGACGCTGGCCCTGGTGACCCCCTTACCTCCTCTCCCCCATGCAGCCAGGGTCTTGGCAGGAAGCAGAATTCAGCCCAGATGATTCCAATAAAGAGACTTTAATGGAGGAATGACTTCTAGAGAGTAGGGTGAGGGGACCCAACAAGGAAGTGGGGGACGCAGAGGCCAGCAGCAGCAGCAGACACTCTATGGCAGAGGCACTGGGGTGGCAAGGGAGCTGGGAAGCAATGCCCCGTCTTCCTCCTCTTCCCTCTCTGCCATCTTCTCTGAGTGCCTCCCATTGGCTCAATCCCACTGGAAGCCAGAAGGCCTGGGGAACTGGGACAACAGGGACCAATACGTGTCAGAGAAGGACAGACGATGGACCTGGTGGGTGTGTGGGGCAAATGGAGGACCTCCTGTATACCCCCAGCACCCCCAGGCTTGGGACTCTTGCTGGCATCTGCACCTTTGTAGTGGCAGTGCCCTACTGGATAAACCTGTCAGTCCTTCTCCACCTGGCAAACTCCTGCATCTTCAGTCTCATTTGGACATTCCCGTTTCTGTACCTCCATCGTGGTACTCAACACACAGCAATCAAGACTGCCTGCCCACGACTCTGCCCCCTCCCTGGACCAAGCTCCTTCAAGGAGTGACCCCATCTTTTAATTGTTGAGAGCACGCAGTAAATGGCAGGTGAGCAGGGCTAGGGTGACATGAGTGAGGCAGTAGCCCTTGGTGTGAGATTTAAGCGGGGGAGGAAGGGAGTTTGCTAGAAATCTTAGTAATCAAGACAAAATATTTGAATACAATATTTAAAAAAAAATCAAATCATCAAACTACAGCCCATGGGTTGGCTACCTCTTTTGAGCGCCCACCCAAACTGGAATAGCTCCCAAGACCTCTAGCATGGTGTTCAAAAATTATTTTTGAGTTGGGCGCAGTGGCTTATGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCTGATCACTAGGTCAGGAGATTGAGATCATCCTGGCTAACGCGGTGAAACCCCGTCTGTACTAAAATTACAAAAAATTAGCTGAGCTTGGTGGCACGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTTCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCAACCTCCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAGGGTTCACAATGCAGGACTCATCTTTACTTAACATACCCTCTATTCACCCTGATATTTTCTATTCTAGTCTAGTTTATTTGGCGTCATTAAAAAGTGCTGCTCATACCTTTCTTTTCTTTTCTTTCTTTTTTCTTTTTTTTGAGATAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACCACAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGACATGTGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGCCAGGCTGGCCTCAAACTCCCAACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTCCTGGGATTATAAGCGTGAGCCACCATGCCCAGCCTGCCCATAACCTTTCAAATTCTGGCTTGAAAAACATTGAGCCTGTCATATCATCCTGCTTAATTTTCTCTGCTTTTAGCTGCCTGATACTTCCTTCTTATGATTTGTCTCTTTGCTGATCTCCCGTCTTGCCTTCGGGGTACAGCTCCCTGAAAGCAGGAACCCCATCTAGCTTGTCACTGCTGTCTTCTCAGCTCCGGGAACAGCGTCTGGCACGTAGGCGGCAGGTGTCCCGCAGTGAGCTGTTGAGCAAGCGAGTGAGTGGTGTTGGAGCAGAGGGGATGTGGGCCCTGGAAGCCAGGCTTTTCTAATTGCCTTGTTTTCCTCCCCTTCCCAG
Seq C2 exon
TTTGCCCTGGGGCCCCAGCCTGGCCCGGGTCACCCTGGCATGAGGAGATGGGCCTGTTGCTCCTGGTCCCGTTGCTCCTGCTGCCCGGCTCCTACGGACTGCCCTTCTACAACGGCTTCTACTACTCCAACAGCGCCAACGACCAGAACCTAGGCAACGGTCATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140511-HAPLN3:NM_178232:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)