HsaINT0076396 @ hg19
Intron Retention
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:4925]
Coordinates
chr5:176308303-176308848:-
Coord C1 exon
chr5:176308693-176308848
Coord A exon
chr5:176308537-176308692
Coord C2 exon
chr5:176308303-176308536
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
TCTTCCTTCCTGGCCCCCAGTGA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTTTGAAAAGATGATCAGCGGCATGTACCTGGGGGAGATCGTCCGCCACATCCTTTTACATTTAACCAGCCTTGGCGTTCTCTTCCGGGGCCAGCAGATCCAGCGCCTTCAGACCAGGGACATCTTCAAGACCAAGTTCCTCTCTGAGATCGAAAG
Seq A exon
GTGCCTGAGGCCTACATTGCCTCCCCCACTTCAGGGGGTCTTTCTGTCCACTGTGGGGGATTGCTGGCCATGGGTGGTGACGAGGTCTGCTCTGGAGGATGAAGTGGGAGAAGTCACGACCCACCTCCCTGTGCTCTCTTCCTTCCTGGCCCCCAG
Seq C2 exon
TGACAGCCTGGCCCTGCGGCAGGTCCGAGCCATCCTAGAGGATCTGGGGCTACCCCTGACCTCAGATGACGCCCTGATGGTGCTAGAGGTGTGCCAGGCTGTGTCCCAGAGGGCTGCCCAGCTCTGTGGGGCGGGTGTAGCTGCCGTGGTGGAGAAGATCCGGGAGAACCGGGGCCTGGAAGAGCTGGCAGTGTCTGTGGGGGTGGATGGAACGCTCTACAAGCTGCACCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883-HK3:NM_002115:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAGACCAGGGACATCT
R:
CACAGACACTGCCAGCTCTTC
Band lengths:
251-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)